PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G077300.1.p
Common NameSb07g006210, SORBIDRAFT_07g006210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 215aa    MW: 22724.7 Da    PI: 8.4523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G077300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-202878256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          + +GVr ++ +gr++AeIrdp     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  Sobic.007G077300.1.p 28 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEQAARAYDAAARRLRGP 78
                          679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-142777IPR001471AP2/ERF domain
CDDcd000181.32E-162784No hitNo description
SMARTSM003804.1E-312891IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212885IPR016177DNA-binding domain
PROSITE profilePS5103222.9062885IPR001471AP2/ERF domain
PRINTSPR003671.2E-92940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-293085IPR001471AP2/ERF domain
PRINTSPR003671.2E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAPKRSISEE VTAAAELPVP EPEQGKPRLR GVRKRPWGRY AAEIRDPARK ARVWLGTFDT  60
PEQAARAYDA AARRLRGPRA TTNYTYPDAV VPAPPPCAAA QVPSASASAS AREESCSSSF  120
STRDDDYHPL AVTVAVAAPP APSQSQSPSS LDLGLGLFPA MVAAQPYLFL NPMQLAPVKR  180
EAERSCYSGS SSPSPSVLGL GLDLNLPPPA EMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-193084762ATERF1
3gcc_A3e-193084762ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.101270.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G077300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937231e-66AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445222.11e-150ethylene-responsive transcription factor 8
TrEMBLC5YIV91e-149C5YIV9_SORBI; Uncharacterized protein
STRINGSb07g006210.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.19e-19ERF domain protein 11