PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G077466.1.p
Common NameSb07g006230, SORBIDRAFT_07g006230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 205aa    MW: 22567.7 Da    PI: 9.0839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G077466.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32116171359
                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh 
  Sobic.007G077466.1.p 116 DGYNWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTI-DGRIAEIVYSGEHNHL 171
                           9***************************************.***************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-27109173IPR003657WRKY domain
PROSITE profilePS5081122.768109173IPR003657WRKY domain
SuperFamilySSF1182903.4E-24112172IPR003657WRKY domain
SMARTSM007742.9E-32114172IPR003657WRKY domain
PfamPF031061.2E-24116170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSGKMQPHEK VAVLKPVASR PFSRFRPFPN VLQDFNANGS PTITVPEETE LIRPKATRSA  60
SLLGNLPTQI AATIDAGSDA ISEEVEANAE HLTCCDHVTA CQAARRNGVR SRLSLDGYNW  120
RKYGQKKVKG SEFPRSYYKC THPSCPVKRK VETTIDGRIA EIVYSGEHNH LKPGKPCLPR  180
KPLSSTSTEV VVCDMRGTDD TMRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-171161731674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G077466.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321236.11e-147uncharacterized protein LOC8072154
TrEMBLA0A1Z5R9M31e-151A0A1Z5R9M3_SORBI; Uncharacterized protein
STRINGSb07g006230.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Representative plantOGRP1262735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.21e-33WRKY family protein