PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G083900.1.p
Common NameSb07g006880, SORBIDRAFT_07g006880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 280aa    MW: 31733.8 Da    PI: 8.2282
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G083900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59.5e-2279171185
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                           f k+lt sdv+k++rl +p+++aee+       ++ +  +  l +ed ++g  W ++++ +++s++yvltkGW  F k+++Lk gD++ 
  Sobic.007G083900.1.p  79 FSKILTASDVGKLNRLLIPRQCAEECfpkisktKSAEDDEDFLNFEDmSTGLIWCFRFCLWNNSKTYVLTKGWHFFIKEKNLKKGDVLS 167
                           88*************************988877333334456999999999************************************** PP

                           EEE- CS
                    B3  82 Fkld 85 
                           F++ 
  Sobic.007G083900.1.p 168 FYRG 171
                           **43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-3169183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2377185IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-1978170No hitNo description
SMARTSM010197.7E-1579189IPR003340B3 DNA binding domain
PfamPF023627.2E-1979178IPR003340B3 DNA binding domain
PROSITE profilePS5086312.44979189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAFSATTISR EMEVQMGKVP PCLNPFQMVN PPLPSRYVSN WSSKPTLVFQ SSMSNGHGAL  60
DLCEGRQRGR KVVDVEYLFS KILTASDVGK LNRLLIPRQC AEECFPKISK TKSAEDDEDF  120
LNFEDMSTGL IWCFRFCLWN NSKTYVLTKG WHFFIKEKNL KKGDVLSFYR GVGKTRSTDH  180
MFIHIKPHTG TMSLPHHVPC PIFSPSRLMI DDWDHENLGF STCHGIVPAS MPLSIGFGEL  240
MPPTNLMPQQ TTFLESTSLE IVRVEKRLRL FGVDIHPFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-287519110120DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G083900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5YJ240.0C5YJ24_SORBI; Uncharacterized protein
STRINGSb07g006880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-32B3 family protein