PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G085300.1.p
Common NameSb07g006980, SORBIDRAFT_07g006980
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 319aa    MW: 32979.3 Da    PI: 10.3744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G085300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31249307259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
  Sobic.007G085300.1.p 249 ADDYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPAMLVVTYEGDHRHD 307
                           69*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-8191230IPR018872Zn-cluster domain
PROSITE profilePS5081132.099243309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-32244308IPR003657WRKY domain
SuperFamilySSF1182901.44E-26244307IPR003657WRKY domain
SMARTSM007749.2E-38248308IPR003657WRKY domain
PfamPF031064.4E-27250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAVDLMSSCG GRAGAYEQLA FQEAAAAGLR SLELLASSLS SPCGAGQRAE SPPLGQIADQ  60
AVSRFRRVIN LLDRTGHARF RRAPVAAVET ETTLQAAVEE PQPPQKKAAL TLDFTKPVPV  120
PAAAATKPAA PAPAPAVSGT STSFLSSVTA GGGGEGSVSK GCSLAVSSGK PPLPKRKLPC  180
PASAPQQAQA HQHQHQHQHL AESSAGRCHC SKKKRSRQGL SRRTVRVPAA AAAAGAPGSH  240
VPASSDIPAD DYSWRKYGQK PIKGSPYPRG YYRCSSAKGC PARKHVERAA DDPAMLVVTY  300
EGDHRHDAAA AAVRARAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-23232310178Probable WRKY transcription factor 4
2lex_A4e-23232310178Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.125450.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G085300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726651e-104EU972665.1 Zea mays clone 385560 WRKY25 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151889.11e-125uncharacterized protein LOC100285526
TrEMBLC5YJD30.0C5YJD3_SORBI; Uncharacterized protein
STRINGSb07g006980.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Representative plantOGRP1988522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-45WRKY DNA-binding protein 11