PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G087600.1.p

Common Name

Sb07g007600, SORBIDRAFT_07g007600

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WOX

Protein Properties

Length: 277aa MW: 29540.2 Da PI: 8.1246

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G087600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.7	1.3e-15	24	84	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ Sobic.007G087600.1.p 24 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 84 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.9	5.3e-34	23	85	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ Sobic.007G087600.1.p 23 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 85 789**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-13	20	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.434	20	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.8E-9	21	90	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-5	22	89	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-13	24	84	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDSHLGQAQA HHRGGEGGEP TTARSRWAPK PEQILILESI FNSGMVNPAK DETARIRRLL 60 ERFGAVRDAN VFYWFQNRRS RSRRRARQLQ QACGAGAAPG QHTTASAAVV AGAGNLHSLN 120 DSVSLFAMHG QSQARNSGMP AVAPMPPAVA SSPHFFGDDV DGGDDLFAIS RQMGLMSRGG 180 DQHRCGYMAN DASQLLSYQP TGTTMTTTTT SSIQVFINGV VYEVPGGGAL LDLAGTFGRD 240 AMLVHSSGEI LPVNENGVLM KSLQMGECYY LVSRST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G087600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954172	1e-112	EU954172.1 Zea mays clone 1457989 WUSCHEL-related homeobox 11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321152.1	0.0	WUSCHEL-related homeobox 10
Swissprot	Q6Z3L4	3e-97	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	A0A1B6PGK4	0.0	A0A1B6PGK4_SORBI; Uncharacterized protein
STRING	Sb07g007600.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109
Representative plant	OGRP4697	12	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-27	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Sobic.007G087600.1.p
Entrez Gene	8057873

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]