PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G090100.1.p
Common NameSb07g007820, SORBIDRAFT_07g007820
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 286aa    MW: 32158.1 Da    PI: 9.3502
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G090100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.2e-1979179194
                           EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                           f k+lt+ dv+k +r+ +p+++ae +         gg    +  l +ed ++g  W+++++ ++ks++y+ltkGW  + k+++Lk gD+
  Sobic.007G090100.1.p  79 FGKILTTTDVGKMNRVLIPRQCAEGCfpkisegnsGG---DDDFLNFEDcSTGLIWRFRFCLCNKSKKYFLTKGWHVYIKDKNLKKGDV 164
                           6799************************999755433...34469****999************************************* PP

                           EEEEE-SSSEE..EE CS
                    B3  80 vvFkldgrsefelvv 94 
                           + F++d ++++++++
  Sobic.007G090100.1.p 165 LSFYRDASKTTSPNH 179
                           ****88766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2568182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-2077183IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-1778175No hitNo description
PfamPF023628.0E-1779181IPR003340B3 DNA binding domain
PROSITE profilePS5086311.80179188IPR003340B3 DNA binding domain
SMARTSM010191.1E-1079185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAFSARTISR EMEVQMGNAP PCLNPFPLVN PLLPARYVSH YSSKSTPVFQ SGMSNAYGAL  60
DLRGERKRGR KVIDMEYLFG KILTTTDVGK MNRVLIPRQC AEGCFPKISE GNSGGDDDFL  120
NFEDCSTGLI WRFRFCLCNK SKKYFLTKGW HVYIKDKNLK KGDVLSFYRD ASKTTSPNHM  180
FIHIKPNTRT MSLPDHVSSP IFSPSSLMIN DQFHQSLGFG TSHGIVPVLK PLSFGSRELM  240
PATNLMTQLT KIPKLVTPEI VREEKHLRLF GVDIDIPNHD YGDES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-25721851111B3 domain-containing transcription factor NGA1
5os9_B6e-25721851111B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G090100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6PGK20.0A0A1B6PGK2_SORBI; Uncharacterized protein
STRINGSb07g007820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Representative plantOGRP1988622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-30B3 family protein