PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G109900.1.p

Common Name

Sb07g015450, SORBIDRAFT_07g015450

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 177aa MW: 19571.1 Da PI: 9.5261

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G109900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.9	4.4e-13	37	94	3	60
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 elkr rr+++NRe+A+rsRqRK++ ++ L v++L + ++L l+ ++++ + + Sobic.007G109900.1.p 37 ELKRKRRMESNRESAKRSRQRKQQHLDDLNLQVDKLRTTKQQLMTALNITTQNYTAAE 94 79*****************************************988887777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-13	35	99	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-10	37	86	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.082	37	100	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	39	90	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-10	39	110	No hit	No description
CDD	cd14702	3.26E-16	40	90	No hit	No description
PROSITE pattern	PS00036	0	42	57	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTLSGGTISS GTYSGSSHGT PSFGSEGGMV DLQARMELKR KRRMESNRES AKRSRQRKQQ 60 HLDDLNLQVD KLRTTKQQLM TALNITTQNY TAAEAQNSVL RTQMMELESR LCALREIICY 120 MNANHVANAA TTMNAHPATI MSGAANYNTF GTSATAWNSA MQMVQQPIDH LLYQCF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	56	KRSRQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.18731	0.0	leaf\| root\| shoot

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G109900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445402.1	1e-130	bZIP transcription factor 11
TrEMBL	C5YKC0	1e-129	C5YKC0_SORBI; Uncharacterized protein
STRING	Sb07g015450.1	1e-130	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3740	32	76
Representative plant	OGRP10708	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	2e-24	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Sobic.007G109900.1.p
Entrez Gene	8069893