PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G111600.1.p
Common NameSb07g016330, SORBIDRAFT_07g016330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 570aa    MW: 61781.1 Da    PI: 6.4092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G111600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29253309259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg+nWrKYGqK+vk+s+++rsYYrCt +gC +kkkve+   d++vvei+Y+g Hnhe
  Sobic.007G111600.1.p 253 ADGFNWRKYGQKQVKSSDNSRSYYRCTNSGCLAKKKVEHFP-DGRVVEIIYRGAHNHE 309
                           7****************************************.***************8 PP
2WRKY100.51e-31420477259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Sobic.007G111600.1.p 420 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 477
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25246311IPR003657WRKY domain
PROSITE profilePS5081122.091247311IPR003657WRKY domain
SuperFamilySSF1182903.79E-23248311IPR003657WRKY domain
SMARTSM007741.8E-31252310IPR003657WRKY domain
PfamPF031061.9E-22254309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-31413479IPR003657WRKY domain
PROSITE profilePS5081132.948414479IPR003657WRKY domain
SuperFamilySSF1182902.35E-27414479IPR003657WRKY domain
SMARTSM007741.2E-35419478IPR003657WRKY domain
PfamPF031061.5E-25421477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MADGDPAPAL ALANEKLPAP AAADVDETRP APPLEPSRGP DEEKRPLEEE EAEVEAHPPR  60
EPTGAPPVDR LGMEVVAAAE ADMKANEVEK ERGDRAKEKR EKDKGKGKEG KEKEKVEEEA  120
KLKVTAVVKV EGTEKEVKVT RPPAGASAET PILAVPVVAV PCFIAPPGFA GQFAMTHQAA  180
LASVTAQAQM HLQSPTSSAC SEVPSSPFYM TPRSLVPLQQ SPSVTEGNIC KPIADKSFSS  240
DSKSHHVVVN MVADGFNWRK YGQKQVKSSD NSRSYYRCTN SGCLAKKKVE HFPDGRVVEI  300
IYRGAHNHEP PQKTRFAKER VTPIGVPSGG ETLRLVNTEI VESSTPTCKL EQSAISETSE  360
QHLFCSSDCE GDAGNKSENE HPSAEPLPKR RTLETTAPNL TPVLRTVREQ KIIVQAGKMS  420
DGYRWRKYGQ KIVKGNPNPR SYYRCTHGGC PVRKHVEKAP DDVNNIVVTY EGKHNHDEPF  480
RSSSIPVSAI SPSATTTEQP NTSTTSDEKP PTITQKDANS ESDKETTLEF GGEKALESAQ  540
TLLSIKTNSD DMKNSVLKET SAAVQVQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-254194791777Probable WRKY transcription factor 4
2lex_A2e-254194791777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.209800.0leaf| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G111600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430070.0BT043007.1 Zea mays full-length cDNA clone ZM_BFc0076I12 mRNA, complete cds.
GenBankBT0552540.0BT055254.1 Zea mays full-length cDNA clone ZM_BFc0054H16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445412.10.0probable WRKY transcription factor 32
TrEMBLC5YKD90.0C5YKD9_SORBI; Uncharacterized protein
STRINGSb07g016330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Representative plantOGRP1449844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.24e-67WRKY DNA-binding protein 4