PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G124100.1.p
Common NameSb07g020090, SORBIDRAFT_07g020090
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 272aa    MW: 29265.1 Da    PI: 5.7812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G124100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-2191140255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Sobic.007G124100.1.p  91 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 140
                           59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.57E-3190150No hitNo description
SMARTSM003801.5E-3591154IPR001471AP2/ERF domain
PROSITE profilePS5103223.35491148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-3391150IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2391150IPR016177DNA-binding domain
PfamPF008476.4E-1592140IPR001471AP2/ERF domain
PRINTSPR003672.2E-1192103IPR001471AP2/ERF domain
PRINTSPR003672.2E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAAAINLPGP SEDLMRAMES FMQEDAAPSP LPMPPAAQYP PATPTHLSPA QMQFIQAQLH  60
LQRNPGLGPR AQPMKPAVPI PPAQQRPAQK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT  120
FDTAEEAALA YDQAAYRLRG DAARLNFPDN AASRAPLDPA VDAKLQAICA TIAAASSKGG  180
ARAKQSKAMP INAPVLEATA ACPSNSSSDE GSGSDEEMSS RTTTTPVVVA PPVVADMGQL  240
DFSEAPWDEA ESFVLRKYPS YEIDWDALLS N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2090148463ATERF1
3gcc_A3e-2090148463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.185560.0embryo| leaf| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G124100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278180.0KJ727818.1 Zea mays clone pUT5770 AP2-EREBP transcription factor (EREB204) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444319.10.0ethylene-responsive transcription factor ERF060
TrEMBLC5YKT70.0C5YKT7_SORBI; Uncharacterized protein
STRINGSb07g020090.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-40ERF family protein