PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G126400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 276aa    MW: 30209.2 Da    PI: 4.5858
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G126400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.4e-2080133356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Sobic.007G126400.1.p  80 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 133
                           56789************************************************9 PP
2HD-ZIP_I/II132.61.4e-4279170192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+aydal+++++ L +++++Lr+
  Sobic.007G126400.1.p  79 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYDALAADHQGLLADNDSLRA 167
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           ++ 
  Sobic.007G126400.1.p 168 QVI 170
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1974138IPR009057Homeodomain-like
PROSITE profilePS5007118.20475135IPR001356Homeobox domain
SMARTSM003896.9E-1978139IPR001356Homeobox domain
CDDcd000866.71E-1880136No hitNo description
PfamPF000463.9E-1780133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-2181142IPR009057Homeodomain-like
PRINTSPR000314.4E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000314.4E-6115131IPR000047Helix-turn-helix motif
PfamPF021833.2E-16135177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDPSAVSFDS GGARRGGGGG GAQMLLFGGG GSANSNGFFR GVPMAVLGMD DATRVGKRPF  60
FTTHEELLEE EYYDEQAPEK KRRLTAEQVQ LLERSFEEEN KLEPERKTEL ARRLGMAPRQ  120
VAVWFQNRRA RWKTKQLETD YDRLKAAYDA LAADHQGLLA DNDSLRAQVI SLTDKLQRKE  180
TSPSATTAAQ EVDQPDEHTA ASGTEKLLVQ QLKDDLHSSG DFTGHGALSS EEEDGGVVSD  240
EGCSFDLPDA MFAAGVTHHG AEEAQLANWT SWFWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.33391e-175embryo| leaf| ovary| root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G126400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597010.0EU959701.1 Zea mays clone 219449 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320635.10.0homeobox-leucine zipper protein HOX5-like
SwissprotQ6ZA741e-117HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLA0A1B6PHI90.0A0A1B6PHI9_SORBI; Uncharacterized protein
STRINGSb07g020300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-52homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]