PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G127800.1.p

Common Name

Sb07g020410, SORBIDRAFT_07g020410

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 480aa MW: 52098.4 Da PI: 5.0927

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G127800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.8	5e-19	370	419	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++d+++ +++ kdAAk+L++++T LKr CR+++ +RWP Rki+sl Sobic.007G127800.1.p 370 SQLTMKDIANLMHMSKKDAAKKLNISVTSLKRLCRKNNTDRWPARKINSL 419 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.891	359	440	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.10	9.0E-5	360	413	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02042	8.1E-19	371	419	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MSDEVYDADG DISRYLQTPS LEPLVLAVPD DGETAATHVV EAPQHVPPPV HGGVALPTAP 60 TTPVNLSMEF GNDDVQNNHA MTMDVQPLQG QGQYGFPAEQ SCVLPELLGA LSLYDHYSMD 120 DGDDDTTVDA LFKSAEDAGN NHSSAVAVEH SVLPVEEDLI TFVPFVLGQL DCSKCRSVRE 180 VLHESANHKL YFVVHVGDPA GTFQHAIIDR AYIDASGQTI LNELMYADLR KRTHGRVQNF 240 IANSVEMLKN DTSGKLTDSC STFQANNSMH IELETNMLKE ILSAPSSNTE AVGVPQSGPQ 300 APHQTVTRAE VNTNVDDTVL NNAANWPVFS PPAAILESSQ VSVQRGMPSS SDASATGNES 360 LLAKQRRRIS QLTMKDIANL MHMSKKDAAK KLNISVTSLK RLCRKNNTDR WPARKINSLD 420 SQIKKLEEAA LRNVGTTGLL AIKEKMEKLN YEKAMVYASV WKVIQENQKH NDGAGGSSG*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MSDEVYDADG DISRYLQTPS LEPLVLAVPD DGETAATHVV EAPQHVPPPV HGGVALPTAP  60
TTPVNLSMEF GNDDVQNNHA MTMDVQPLQG QGQYGFPAEQ SCVLPELLGA LSLYDHYSMD  120
DGDDDTTVDA LFKSAEDAGN NHSSAVAVEH SVLPVEEDLI TFVPFVLGQL DCSKCRSVRE  180
VLHESANHKL YFVVHVGDPA GTFQHAIIDR AYIDASGQTI LNELMYADLR KRTHGRVQNF  240
IANSVEMLKN DTSGKLTDSC STFQANNSMH IELETNMLKE ILSAPSSNTE AVGVPQSGPQ  300
APHQTVTRAE VNTNVDDTVL NNAANWPVFS PPAAILESSQ VSVQRGMPSS SDASATGNES  360
LLAKQRRRIS QLTMKDIANL MHMSKKDAAK KLNISVTSLK RLCRKNNTDR WPARKINSLD  420
SQIKKLEEAA LRNVGTTGLL AIKEKMEKLN YEKAMVYASV WKVIQENQKH NDGAGGSSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G127800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444338.1	0.0	uncharacterized protein LOC8070087
TrEMBL	C5YKX7	0.0	C5YKX7_SORBI; Uncharacterized protein
STRING	Sb07g020410.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14429	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-09	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sobic.007G127800.1.p
Entrez Gene	8070087