PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G132000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 476aa    MW: 49310.3 Da    PI: 8.4995
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G132000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32272325255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sobic.007G132000.1.p 272 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 325
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15269326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28270326IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23272325IPR006447Myb domain, plants
PfamPF002497.3E-7273324IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEARAASAPD LSLHISLPSS TTASSPSAPA PGLGAAGGAG RGAQQPAAGG DPWRRLNGST  60
ASTELSLSPP PRQQEAVAAG DVLPWRFRPP PATNNYSSST TAEVATFVPV TVPRLSFDAA  120
AEAEAARARP INGVPVYSSP RAGAAHPFLG GGGGEYRQQG HHHSKAAGLY NNPYHSSSWP  180
SSMLRSTTTT TSPGAVAPSA SDPAAASSYL SPPSAYHRML SSTGRLHLQG VLADTLRGYG  240
GGGHHQHQHL GSLAAARYMP RLPVSRRGMR APRMRWTSSL HARFVHAVEL LGGHERATPK  300
SVLELMDVKD LTLAHVKSHL QMYRTVKSTD KPATSSGPGD GGGGSGDDDL PCAQRAPSSS  360
AGREVSPQAF TGHRSASSEG AASHAGGDVE CSSADDSDGG RPRSASSSRG QWLPRNACNA  420
DTRHLVGVSS TFEDMEEPCG SVGLQQASRS HEMSCPTPSL EFTLGRPNWN GAEHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-16273327357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16273327357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16273327357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16273327357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G132000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320046.10.0probable transcription factor RL9
SwissprotQ0J2353e-88ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A1B6PHM70.0A0A1B6PHM7_SORBI; Uncharacterized protein
STRINGSb07g020820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-46G2-like family protein