PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G135301.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26359.9 Da    PI: 9.3898
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G135301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          kri+n + rqvtfskRr g++KKA+EL +LCdaev +++fsstg+ly+++s
  Sobic.007G135301.1.p  9 KRIDNATSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRLYDFAS 59
                          79***********************************************86 PP
2K-box77.53.5e-2678170698
                 K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                           ++  ++a+a+ +q+e+  L+++++nLq+ +R+llG++L+ L++++Lq+Le++Le sl++iR kK++l+++qi+el kk   ++++n +L
  Sobic.007G135301.1.p  78 QTMSASAEAKLWQREAGSLRQQLHNLQEHHRQLLGQQLSGLDVRDLQNLENKLEMSLRNIRLKKDQLIFDQIQELSKKGSLMHQDNIEL 166
                           3336788899******************************************************************************* PP

                 K-box  95 rkkl 98 
                            +k+
  Sobic.007G135301.1.p 167 YNKV 170
                           9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.506161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-40160IPR002100Transcription factor, MADS-box
CDDcd002657.07E-44278No hitNo description
SuperFamilySSF554559.81E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2483170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.52586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TGRLYDFAST  60
SMKSVIERYS EAREEHHQTM SASAEAKLWQ REAGSLRQQL HNLQEHHRQL LGQQLSGLDV  120
RDLQNLENKL EMSLRNIRLK KDQLIFDQIQ ELSKKGSLMH QDNIELYNKV NLLHQENIEL  180
RKKVYGQGVN EHPTSTTVRH SILNTENEDV PINLELSMQR DRSETPSIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-23186187MEF2C
5f28_B3e-23186187MEF2C
5f28_C3e-23186187MEF2C
5f28_D3e-23186187MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G135301.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321045.11e-168MADS-box transcription factor 23
SwissprotQ6EP493e-95MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1Z5R9Q01e-167A0A1Z5R9Q0_SORBI; Uncharacterized protein
STRINGPavir.Fb01587.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-89AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]