PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G135700.1.p

Common Name

Sb07g021140, SORBIDRAFT_07g021140

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

TCP

Protein Properties

Length: 258aa MW: 27475 Da PI: 6.6742

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G135700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.4	6.2e-35	79	216	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa 70 ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l++ ++ss+ Sobic.007G135700.1.p 79 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLVDAaepavalvsggpptvvkgrgeGNSSS 167 689************************************************************99999999999988888888655555 PP TCP 71 seceaesssssasnsssg..............................k 89 + c +++s+++a ++ + Sobic.007G135700.1.p 168 TCCLTVDSREEATEKARSrggggggtggpdgppalmeehgrgelgwimT 216 4444444444444332223445555555555555555444444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	33.985	80	138	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.8E-32	80	143	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MPSTAMSWDG YGGQIFPADM SSFHHQDTLE AVFRQPETTA PLQAPAAAGE MELLLRNGSP 60 VPVVDAGVHA AAAPRKRPFR TDRHSKIRTA QGVRDRRMRL SVGVAREFFA LQDRLGFDKA 120 SKTVNWLLTQ SKPAIDRLVD AAEPAVALVS GGPPTVVKGR GEGNSSSTCC LTVDSREEAT 180 EKARSRGGGG GGTGGPDGPP ALMEEHGRGE LGWIMTEATA AAAAATAQPQ QMDGLEYYYQ 240 YCLQLEEMMR CNGGMPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-14	85	138	1	54	Putative transcription factor PCF6
5zkt_B	2e-14	85	138	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G135700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961498	1e-166	EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBank	KJ727762	1e-166	KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444387.1	0.0	transcription factor TEOSINTE BRANCHED 1
TrEMBL	C5YL71	0.0	C5YL71_SORBI; Uncharacterized protein
STRING	Sb07g021140.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	5e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	Sobic.007G135700.1.p
Entrez Gene	8075661