PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G138800.1.p
Common NameSb07g021420, SORBIDRAFT_07g021420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 305aa    MW: 32239.1 Da    PI: 8.5888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G138800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd+ lv +v+ +G+g+W++++   g+ R+ k+c++rw +yl
  Sobic.007G138800.1.p 14 KGPWTPEEDLVLVSYVQDHGPGNWRAVPTSTGLMRCSKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding51.52.3e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ +E++l++++ ++lG++ W++Ia++m+  Rt++++k++w+++l
  Sobic.007G138800.1.p  67 RGNFSDQEEKLIIHLQALLGNR-WAAIASYMP-ERTDNDIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.767961IPR017930Myb domain
SuperFamilySSF466897.86E-3011108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002492.7E-151461IPR001005SANT/Myb domain
CDDcd001675.52E-111661No hitNo description
PROSITE profilePS5129423.29162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2465115IPR009057Homeodomain-like
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PfamPF002493.1E-1567112IPR001005SANT/Myb domain
CDDcd001672.47E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRPPCCEKG GVKKGPWTPE EDLVLVSYVQ DHGPGNWRAV PTSTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF SDQEEKLIIH LQALLGNRWA AIASYMPERT DNDIKNYWNT HLKKKFTKTG  120
GGGGAEAKSG RCAAPKGQWE RRLQTDIHTA RQALREALSL DPDPVPPSAK PEQVPQQPPA  180
PAATQAAGQA TYASSAENIA RLLEGWMHPG GGSGAAGKVS SGSRSSASSV SAFSGDEGAS  240
ASNSGTAVRM PERPTRTSKA VDDAGTAGPG PSFSMLESWL LDDGVGHGDT GLVSVPLGDP  300
CEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-25141164105C-Myb DNA-Binding Domain
1msf_C9e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G138800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357491e-132BT035749.2 Zea mays full-length cDNA clone ZM_BFb0081I17 mRNA, complete cds.
GenBankKJ7278811e-132KJ727881.1 Zea mays clone pUT5974 MYB transcription factor (MYB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444403.10.0myb-related protein 306
SwissprotP813928e-98MYB06_ANTMA; Myb-related protein 306
TrEMBLC5YL990.0C5YL99_SORBI; Uncharacterized protein
STRINGSb07g021420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-85myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]