PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G148500.1.p
Common NameSb07g022265, SORBIDRAFT_07g022265
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 231aa    MW: 24580.2 Da    PI: 4.5172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G148500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-172372255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +ykGVr++k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Sobic.007G148500.1.p 23 RYKGVRFRK-WGRWVSEIRMPNS---RERIWLGSYSSAEKAARAFDAAAVCLRG 72
                          7********.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-272383IPR001471AP2/ERF domain
PfamPF008471.6E-102372IPR001471AP2/ERF domain
CDDcd000182.02E-182383No hitNo description
SuperFamilySSF541711.9E-182382IPR016177DNA-binding domain
PROSITE profilePS5103221.682381IPR001471AP2/ERF domain
SMARTSM003801.1E-322387IPR001471AP2/ERF domain
PRINTSPR003673.6E-82435IPR001471AP2/ERF domain
PRINTSPR003673.6E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDDGAGASRS DGEGSPRLPA ERRYKGVRFR KWGRWVSEIR MPNSRERIWL GSYSSAEKAA  60
RAFDAAAVCL RGSRAGSLNF PESPPNVRHI PGAMLTPEQI QAEAARHANQ LLPSPPVASP  120
AASSSSQPAA AGGASSDRTT LSMPPSTYYG SGAAVCGDDE ALDWSFMDAL PSMPASSMGM  180
GNSGADIVPA LDDFMYGSPH PVMPPSEEVT QDMIDDDDDH TFISDDLWRF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G148500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283820.0KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444464.21e-166ethylene-responsive transcription factor ERF017
TrEMBLA0A1B6PHV71e-165A0A1B6PHV7_SORBI; Uncharacterized protein
STRINGSb07g022265.11e-162(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP1454744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-24ERF family protein