PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G153700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 436aa    MW: 47717.8 Da    PI: 10.7952
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.17e-30220317297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                           ++ r+ws eDe+++L +li+f+ak+g    + +d+ ++++++ +++ +++s+ ql++K+rrLK+K+k   ++ak+g++p++ ++hd+++
  Sobic.007G153700.1.p 220 RPPRVWSPEDEVTILSALIEFRAKKGRlpASIQDTGKVHSQIIHQLTANASTAQLSDKVRRLKHKYKLLLTRAKNGRDPNLPTQHDRDV 308
                           578************************777888******************************************************** PP

                DUF573  89 felskkiWg 97 
                           ++lskk+Wg
  Sobic.007G153700.1.p 309 YQLSKKVWG 317
                           ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-28222317IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAPKRPAAAA GSGSASDASD GEAGAAPNSH RRRASPSPSR SRSRSRSKSP RSNARPSVAA  60
SDSDADARAP SPRRANRERS PRDHLDSDAD ADAGAGTGRR APSPRRRGER SPSFHSDSDS  120
DADAAGRSPS PRRKRERTPG LRSDSDSDNS AAAAASDDDG GGAGDASPLP SARRSFRIET  180
SNVKPVSTRP MDVPLRGAAG SSQRRPKRRP SPHSPEHQKR PPRVWSPEDE VTILSALIEF  240
RAKKGRLPAS IQDTGKVHSQ IIHQLTANAS TAQLSDKVRR LKHKYKLLLT RAKNGRDPNL  300
PTQHDRDVYQ LSKKVWGLKS LVMVRGSRVS HEDTEDAEES NEEQEIEESD EDMENGWELR  360
DRTSKKPKAV EELSKEHPSG PIFRKAFGVL EKSKARAVEE KLRKFRMSEI RQQLQRMDLM  420
KETVGMVLDA LEGAY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.89361e-128pollen| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9665590.0EU966559.1 Zea mays clone 295277 hypothetical protein mRNA, complete cds.
GenBankKJ7279960.0KJ727996.1 Zea mays clone pUT6116 GeBP transcription factor (GBP20) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321536.10.0probable transcription factor At4g00390
TrEMBLA0A1B6PI540.0A0A1B6PI54_SORBI; Uncharacterized protein
STRINGSb07g022740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Representative plantOGRP1071349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-14DNA-binding storekeeper protein-related transcriptional regulator