PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G159300.1.p
Common NameSb07g023280, SORBIDRAFT_07g023280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 245aa    MW: 26331.5 Da    PI: 8.7574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G159300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-133177354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  Sobic.007G159300.1.p 31 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 77
                          79*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-112680No hitNo description
Gene3DG3DSA:4.10.280.101.9E-142780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-142783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1962877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-123483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVVTDDGVVE GRGLAEGERL TPALRKKERG RSHSEAERKR RQRINAHLAT LRTLVPSASR  60
MDKAALLGEV VRHVRELRAK ASDAAAGVGV GVIPGEGDEV GAEEEDDDYW RQHGRRHFGA  120
DDDDSLPPPR RVVRAWVCCD DRPGLLSDLG RAVRSVRNAR PVRVEIATVG GRTRSVLELD  180
VSGDDGDDDN AATAAAAGNG RAVALSTLRA AMRAVLLNRD EHVIAAGDGY KRPRFSSAQI  240
AKVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12440RKKERGRSHSEAERKRR
23641ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G159300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444528.11e-171transcription factor bHLH30
TrEMBLC5YMN01e-170C5YMN0_SORBI; Uncharacterized protein
STRINGSb07g023280.11e-170(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-19basic helix-loop-helix 32