PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G166100.1.p
Common NameSb07g023900, SORBIDRAFT_07g023900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 671aa    MW: 72107.1 Da    PI: 4.4097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G166100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-53321601129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+ykvePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+sgyWk+tg
  Sobic.007G166100.1.p  32 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATSSGYWKTTG 119
                           579***************************.99***************4357888999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           kd+ev + + ++vg+kktLvf+ grapkge+t+Wvmheyrle
  Sobic.007G166100.1.p 120 KDREVRH-GPRVVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 160
                           *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6127180IPR003441NAC domain
PROSITE profilePS5100559.38732180IPR003441NAC domain
PfamPF023651.0E-2834159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MTHPSSSSSS APPPPPLPPP GAAAGAAEAT SLAPGFRFHP TDEELVSYYL KRKVLGRPLK  60
VDAIAEVDLY KVEPWDLPAR SRLRSRDSQW YFFSRLDRKH ANRARTNRAT SSGYWKTTGK  120
DREVRHGPRV VGMKKTLVFH AGRAPKGERT NWVMHEYRLE GDDAAGIPQD SFVVCRIFQK  180
AGPGPQNGAQ YGAPFVEEEW EEEDADVGLL PVEGDAAVDP EVPRAPVEIP GALERGYLQM  240
SDLIQGLGDQ NGNGTPSLPV SDTSNNSNHS EDVDGNSGDI LSDPNLGSNF LQYEPGEQNS  300
LMLNGSIISN ANAGDFFTNS SPSDGFLELK DFADAANVDF PLGNGSTICP SDGWAWKTPD  360
SAEAVNGANN EIPPVPDDQT FQPDELEQLL QSIQQDSHFG SSIIDPRHSS MTNSVLPEDD  420
SLMFYDAPFD STMCDDGFGQ NGILGSAATN LSGIGMVDDG MQYFDAMDEN LFNDILGSIQ  480
QPAGNSSHAF NGPVLTQEVN NTMYTYSPTQ KVLEPNFVVG APSSARLPEA GSQLNCVVLP  540
DGQAKSSAIG KGFVKILDSI SAPPAFAGEF PANHRKSLAH ISGARPNTLH VSAEVIRIGS  600
LAVPSGADKW ALQKDQGMEL LFSADFEPDT RIHCGCNTIT AVLRGGFCLF FVSAIMLLVS  660
YEVGMCIYGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47271809168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.54160.0pollen| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G166100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639170.0BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444576.10.0NAC domain-containing protein 53
TrEMBLA0A1Z5RAV30.0A0A1Z5RAV3_SORBI; Uncharacterized protein
STRINGSb07g023900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Representative plantOGRP1446944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-82NAC domain containing protein 2