PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G179000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SRS
Protein Properties Length: 313aa    MW: 32037.1 Da    PI: 8.2536
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G179000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702203.94.4e-63952483153
                DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvks.......tWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 
                           +gt+sCqdCGnqakkdC+h+RCRtCCksrgfdC thvks       tWvpaakrrerqqq+a+ +++ ++++ ++a  ++ +   ++++
  Sobic.007G179000.1.p  95 AGTISCQDCGNQAKKDCVHMRCRTCCKSRGFDCPTHVKStsgkpwsTWVPAAKRRERQQQQATGAAEPSKRH-RDAGAQPSS---TTAT 179
                           6899**********************************633333337***********99999865554433.333333332...3344 PP

                DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                           ++ss + +++++++ + ++++P+evssea+frcvr++ vd+ ++e+aYqt+vsi+GhvfkGiL+d G++
  Sobic.007G179000.1.p 180 TTSSGEQQQQQQQMAVVAERFPREVSSEALFRCVRLGPVDEPDAEVAYQTSVSIAGHVFKGILHDVGPD 248
                           44444445556666677778***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-5897248IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.2E-2399148IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-21199247IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAGFPLGGGG GHGRGDHPHV NPSSSGSESA AAAAAYLYTA ATASAAPRGG FQLWPHHPAQ  60
EHHHHFYAPN IIRFADDPAA GSSRGGRGSA SGAGAGTISC QDCGNQAKKD CVHMRCRTCC  120
KSRGFDCPTH VKSTSGKPWS TWVPAAKRRE RQQQQATGAA EPSKRHRDAG AQPSSTTATT  180
TSSGEQQQQQ QQMAVVAERF PREVSSEALF RCVRLGPVDE PDAEVAYQTS VSIAGHVFKG  240
ILHDVGPDPS VAAGGGGGGG FRHATDGSSP STAAAGEGSV AGPVSSSAVV MDPYPTPGPY  300
GGAAHFFHGH PR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.27420.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G179000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687730.0EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321456.11e-157protein SHI RELATED SEQUENCE 1
TrEMBLA0A1B6PID10.0A0A1B6PID1_SORBI; Uncharacterized protein
STRINGSb07g025020.11e-153(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.15e-37Lateral root primordium (LRP) protein-related