PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G189400.1.p
Common NameSb07g025920, SORBIDRAFT_07g025920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 294aa    MW: 32045.8 Da    PI: 5.9136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G189400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09132179455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Sobic.007G189400.1.p 132 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 179
                           8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.94E-11126183No hitNo description
SuperFamilySSF474593.66E-17126194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16128192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MADFSQNDSL LLKMPSHSPN FSSLLFYGHN HGEAAAPANA NAMVEDASLE SSSAVVDTSP  60
QDSASPMERK RKATEDSATL SSAQSKDCKQ QESKSKRGKR PNKETEEKST TEDEATKGYI  120
HVRARRGQAT DSHSLAERVR RERISERMRM LQALVPGCDK VTGKALILDE IINYVQSLQN  180
QVEFLSMRIA SMSPVLYGFG LDSDGLHDHA QKMGGMFQEA LAMPGPVLSQ ASPAPSQAIM  240
DTTSTTPYSL QGQGSISFSQ ENGSTYLMQQ AVGEPTRQEL LNQLVFNNMC SFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G189400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353770.0BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444680.10.0transcription factor bHLH137 isoform X1
TrEMBLC5YHP20.0C5YHP2_SORBI; Uncharacterized protein
STRINGSb07g025920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-38bHLH family protein