PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G189800.1.p
Common NameSb07g025940, SORBIDRAFT_07g025940
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 491aa    MW: 51753.9 Da    PI: 6.9421
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G189800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.3e-071662242
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          +++ C+ ++e  + l+C+ +   lC  C  + H        H +vpl
  Sobic.007G189800.1.p 16 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkHVRVPL 62
                          6899*******9*********************65778888887775 PP
2CCT63.18.5e-22438481144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ a++RY+eK+k+R++eK+irYesRK +A++R+RvKGrFvk++
  Sobic.007G189800.1.p 438 RDSAMQRYREKKKNRRYEKHIRYESRKLRADTRKRVKGRFVKST 481
                           899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-121562IPR000315B-box-type zinc finger
CDDcd000211.16E-81862No hitNo description
PROSITE profilePS501199.7552062IPR000315B-box-type zinc finger
PROSITE profilePS5101715.19438480IPR010402CCT domain
PfamPF062034.3E-16438480IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKSGGGGGGG GGGGGQQWPC DYCGEAAAAL HCRADAARLC VACDRHVHAA NALSRKHVRV  60
PLCAGCAARP AAARVSPVPG ADPAFLCAGC CDDAASAAVR VPVEGFSGCP SAAELAASWG  120
LDLRRAEEGK DGAGGDIDDG DPFLSVLDYS VLGVAVDPDL RDLYVPCDPP RVPAPDAAGA  180
RPLRGQALCD QLAEMARRET DTAHAHPHSD LSPRTPRRTS AASGGRLPPG KMSPPAAMPT  240
HHPPPAAVQE VPLPYTSLLM MASANCADLI GGADRVGDDD EQLLWDCAAP SVPPTQIWDF  300
NLGRSRDHDE KSALEVGYGS NHGGFMIKSY SDMLKEISSG TTKDLEDIYD SRYCSTAEDI  360
MSSNICQLSS KNVSTASNKR KLSSCASTID GPTTSGNHVP TSGPALTREI SFGDQTVSTP  420
AAERPAVRID SETLAQNRDS AMQRYREKKK NRRYEKHIRY ESRKLRADTR KRVKGRFVKS  480
TEALNAGYGG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.119360.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G189800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284180.0KJ728418.1 Zea mays clone pUT6723 orphans transcription factor (Orphan268) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444681.10.0zinc finger protein CONSTANS-LIKE 15
TrEMBLC5YHP50.0C5YHP5_SORBI; Uncharacterized protein
STRINGSb07g025940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Representative plantOGRP5453813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.12e-18B-box type zinc finger protein with CCT domain