PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G190333.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 236aa    MW: 24707.3 Da    PI: 10.8306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G190333.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.83.8e-31231641128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                           lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd         +++e e yfF+ r   +  ++   rat+sg+Wk
  Sobic.007G190333.1.p  23 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSLDPWDVVVvpgpD-ASSEGEKYFFAVRPAGAG-KSGGARATASGRWK 108
                           79****************************.8899999**********6334332.2345699****9988765.678899******** PP

                   NAM  85 atgkdkevlsk.....kgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                            +gk+k+v+       ++ lvg+k+ ++f          +a  +  t Wvmheyrl
  Sobic.007G190333.1.p 109 PSGKEKPVVLPrpcggGSLLVGVKRAMTFVprrkkkaASSAAAALTTGWVMHEYRL 164
                           *********99899877777**********7654332233444459********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-4121190IPR003441NAC domain
PROSITE profilePS5100541.423190IPR003441NAC domain
PfamPF023653.4E-2124164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAAERAPVLV RHAGGGVEAL RQLPPGFRFR PTDEELVVQY LRRKAFGVPL PAAVIPVVRD  60
LYSLDPWDVV VVPGPDASSE GEKYFFAVRP AGAGKSGGAR ATASGRWKPS GKEKPVVLPR  120
PCGGGSLLVG VKRAMTFVPR RKKKAASSAA AALTTGWVMH EYRLAAPLHK NGCSLAQAQG  180
EWVVCRVFQK GSSSSRPSRR RAVPAAHPAA VAASPSSASS CVTDGSSSDL DEVNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-302319617171NO APICAL MERISTEM PROTEIN
1ut4_B5e-302319617171NO APICAL MERISTEM PROTEIN
1ut7_A5e-302319617171NO APICAL MERISTEM PROTEIN
1ut7_B5e-302319617171NO APICAL MERISTEM PROTEIN
3swm_A5e-302319620174NAC domain-containing protein 19
3swm_B5e-302319620174NAC domain-containing protein 19
3swm_C5e-302319620174NAC domain-containing protein 19
3swm_D5e-302319620174NAC domain-containing protein 19
3swp_A5e-302319620174NAC domain-containing protein 19
3swp_B5e-302319620174NAC domain-containing protein 19
3swp_C5e-302319620174NAC domain-containing protein 19
3swp_D5e-302319620174NAC domain-containing protein 19
4dul_A5e-302319617171NAC domain-containing protein 19
4dul_B5e-302319617171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.32460.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G190333.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555060.0EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320646.11e-167NAC domain-containing protein 18
TrEMBLA0A1Z5RBQ71e-166A0A1Z5RBQ7_SORBI; Uncharacterized protein
STRINGGRMZM2G054252_P021e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Representative plantOGRP1456244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.15e-29NAC domain containing protein 41