PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G192900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 252aa    MW: 27840.6 Da    PI: 8.2194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G192900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.4e-2790139251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                           rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  Sobic.007G192900.1.p  90 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALVVFSPAGRLYEFAS 139
                           8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-3278140IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.5281141IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-2783103IPR002100Transcription factor, MADS-box
CDDcd002654.91E-3583151No hitNo description
SuperFamilySSF554556.41E-2883162IPR002100Transcription factor, MADS-box
PfamPF003191.9E-2690137IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-27103118IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-27118139IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
METPSVRFPT HVQLAERARE QRSDHATQAS SSPLARLFSS VGCPPTQGLG KIEMEVGAAA  60
RRRARAAHQQ EEIRESKAGR RKRGPVELRR IEDRTSRQVR FSKRRSGLFK KAYELSVLCD  120
AQVALVVFSP AGRLYEFASA DSSIEKVFGR YWDLANTEID LNIEARESRV NCNIQLSQNE  180
EPIGGSLADL LIMIAQGAME ENLNDLNMAG IRGLEEALGD ALAVIRNKLT MKVTGCLGGP  240
EPEVCTFFHQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A5e-1983184293Myocyte-specific enhancer factor 2B
1n6j_B5e-1983184293Myocyte-specific enhancer factor 2B
1tqe_P5e-1983174384Myocyte-specific enhancer factor 2B
1tqe_Q5e-1983174384Myocyte-specific enhancer factor 2B
1tqe_R5e-1983174384Myocyte-specific enhancer factor 2B
1tqe_S5e-1983174384Myocyte-specific enhancer factor 2B
6c9l_A5e-1983174384Myocyte-specific enhancer factor 2B
6c9l_B5e-1983174384Myocyte-specific enhancer factor 2B
6c9l_C5e-1983174384Myocyte-specific enhancer factor 2B
6c9l_D5e-1983174384Myocyte-specific enhancer factor 2B
6c9l_E5e-1983174384Myocyte-specific enhancer factor 2B
6c9l_F5e-1983174384Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16082RRRARAAHQQEEIRESKAGRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G192900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9431519e-83EU943151.1 Zea mays clone 1571160 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445812.20.0MADS-box transcription factor 51 isoform X1
TrEMBLA0A1B6PIN30.0A0A1B6PIN3_SORBI; Uncharacterized protein
STRINGSb07g026180.11e-143(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.23e-27AGAMOUS-like 71