PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G197700.1.p
Common NameSb07g026610, SORBIDRAFT_07g026610
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 398aa    MW: 42162.9 Da    PI: 5.9514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G197700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09203250455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sobic.007G197700.1.p 203 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 250
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16197264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-10197254No hitNo description
PROSITE profilePS5088815.301199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-16199262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEGSRAGAGD YIASLLSSSP RLDFGVLGAA DGGGEEEDCL DKFCGDPGFA ARAARLSSFS  60
AQRFPGAASL FGLPPPVPAA SGGGEFAGSR EASSVSDPAS AMMKDANAKK RKAPPAAKGK  120
GKESSVQAGE QKDPDTKRCK TEGGEGKEGS PVKPKPEQAG SDSSVEDGGQ TQKPPGKGKN  180
AKLVEPPKDY VHVRARRGQA TDSHSLAERV RRERISQRMK VLQDLVPGCN KVIGKALMLD  240
EIINYVQSLQ RQVEFLSMKL ATVNPLDFSN LPTLLQKDMF QACGPSASSV FSLESSSSGF  300
PFSDHGDVFQ SFVPNGLENQ CGLNPLDLAL SHATTGQYGF QDGTAGTTNL QQRSYWEEDL  360
QSVFHIDNNG QSQENGVSVS AQSFHGQLQE GHMKMEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G197700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9576390.0EU957639.1 Zea mays clone 1600747 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445835.10.0transcription factor bHLH78
TrEMBLC5YI620.0C5YI62_SORBI; Uncharacterized protein
STRINGSb07g026610.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-52bHLH family protein