PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G203500.1.p
Common NameSb07g027080, SORBIDRAFT_07g027080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 1096aa    MW: 121249 Da    PI: 6.5434
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G203500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.6e-22134235199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F
  Sobic.007G203500.1.p 134 FCKTLTASDTSTHGGFSVPRRAAERIfphldfsM-QPPA-QELQARDLHDAIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLF 220
                           99*****************************954.4444.49*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                            +dg  +++l+++++r+
  Sobic.007G203500.1.p 221 IRDG--RQQLLLGIRRA 235
                           *666..55569999997 PP
2Auxin_resp120.31.5e-39260343183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s++rr++Gt++g+sd+dpvrW+nS+Wr+++
  Sobic.007G203500.1.p 260 AAHAAANNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESATRRYMGTITGISDMDPVRWKNSQWRNIQ 343
                           79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-41123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-39127249IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-18133225No hitNo description
SMARTSM010191.3E-20134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646134236IPR003340B3 DNA binding domain
PfamPF023627.2E-20134235IPR003340B3 DNA binding domain
PfamPF065071.5E-34260343IPR010525Auxin response factor
PfamPF023092.6E-99731061IPR033389AUX/IAA domain
PROSITE profilePS5174527.0119771061IPR000270PB1 domain
SuperFamilySSF542778.83E-89891056No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1096 aa     Download sequence    Send to blast
MAAAAAPGTS SGGAGGDGGG GTKVNQELWY ACAGPLVTLP PAGSLVVYFP QGHSEQVAAS  60
MRKDADAKIP SYPNLPSKLI CILRSVTMLA DPDTDEVYAR MTLQPVSNVT HCDKETLLAS  120
DLALKQTRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PHLDFSMQPP AQELQARDLH  180
DAIWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDGRQQLLL GIRRANRQPV  240
NLSSSVLSSD SMHIGILAAA AHAAANNSQF TVFYNPRASP SEFVIPFAKY QKAVYSNQLS  300
LGMRFRMMFE TEESATRRYM GTITGISDMD PVRWKNSQWR NIQVAWDEAA PTERRTRVSL  360
WEVEPVIAPF FIYPSPLFTA KRPRQPGITD DDSSEMDTLF KRTMPWFGEE IGKKDLSTQN  420
SLVPGLSLVQ WMNMQQTSSL TSTVMQPELL NSLAGKPVQT LAAADLSRQI SFQPQFLQQN  480
NIQFNTSLLP PQNQQTEQLA NVIATPNQLG SVIVPQKVVP NCSSEQKQNP VTQPLQVSQP  540
MISMAQPQLV HTQLQQPQVI LQAQPQQPQV IVQAQLQQQQ PLVQNHTTIQ GGLQQIQLLQ  600
QQHPHLQQQQ VQQSVQEQQQ IKIQPFQVPN DANMVTQLSD QMKIQLLKAL QPQQPLVMDQ  660
QKMILDLQQQ AVNSQSTAQQ CSQVATQVVG LHSSSTIQYP TQQKTQPHKT IQDFPGNAVS  720
IVKSENVTSM GARSLHVPGG VQSMKTDEVP SSSTSPSTNN NPVILRSTPS SSKNQCLSTA  780
TKAPQSSVVL GCTLEQGMKP YESTQHTMAI PKMAEERPAT GQDYMNSTQI EYLDTSSSAT  840
SVCLSQADGS LQQNFPPSFN QHQTLRETVP DSEFEVTDPG TNFLFGANID GHMEPLNEDA  900
LLGNTFETEK YMDQMPGNGI SNYISSKDAQ QELSSSVISH SFGVADIAFN SIDSSINDIP  960
FLNRNSRAPG PAHQRIRTYT KVHKRGAVGR SIDINRYSGY DELKHDIARM FGIEGQLSDQ  1020
NRVCWKLVYE DHEKDVLLVG DDPWEDFVNC VRCIRILSPQ EERQMRLASD YGDSFLGNQA  1080
CSSSDGVHPW RVTGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582436451388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.168580.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G203500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279640.0KJ727964.1 Zea mays clone pUT6076 ARF transcription factor (ARF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445864.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLC5YIB60.0C5YIB6_SORBI; Auxin response factor
STRINGSb07g027080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]