PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G205100.1.p
Common NameSb07g027250, SORBIDRAFT_07g027250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 245aa    MW: 25596.9 Da    PI: 8.4941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18e-124694456
                   AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +GVr  + +g W+AeIr p++   r r ++g+f  a +Aa a++aa+ +++ge
  Sobic.007G205100.1.p 46 TGVR-ERLWGGWAAEIRIPRT---RSRLWVGRFQHALQAALAYDAAMFCFYGE 94
                          6998.777**********965...4************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.51744105IPR001471AP2/ERF domain
SMARTSM003802.0E-1144111IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-124596IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-1945105IPR001471AP2/ERF domain
PfamPF008478.0E-64794IPR001471AP2/ERF domain
CDDcd000181.06E-1647105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTATAPTSSS AAASGGRSQS QKRRAGGRST TAATGARRPH KDLGWTGVRE RLWGGWAAEI  60
RIPRTRSRLW VGRFQHALQA ALAYDAAMFC FYGERLPSQR KFNFPGAPRP AIPEHIRVQL  120
TVANIKEIAA DYGRSCAGLF FVAPPPAQLC PTPPAPPAPL TTTPPLMVPA PAPALATYGA  180
AAAAAAASAE ATSTQTDVHA AGNAGNRVDG EFMASADDCL LSCNPDDFVG VLDIDEVDLF  240
IGQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G205100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275141e-134KJ727514.1 Zea mays clone pUT5373 AP2-EREBP transcription factor (EREB150) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444750.11e-177ethylene-responsive transcription factor ERF015
TrEMBLC5YIM21e-176C5YIM2_SORBI; Uncharacterized protein
STRINGSb07g027250.11e-177(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-14ERF family protein