PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G205200.1.p
Common NameSb07g027260, SORBIDRAFT_07g027260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 179aa    MW: 19399 Da    PI: 11.1197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G205200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.9e-114086555
                   AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          GVr  + rgrW+A+Ir p +   r+r ++g+f  a +Aa a++ a  +++g
  Sobic.007G205200.1.p 40 GVR-ERVRGRWAAQIRIPGT---RTRLWIGRFELAVQAALAYDTALFCFHG 86
                          898.5559*********833...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.3983799IPR001471AP2/ERF domain
SMARTSM003805.3E-1337105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-173899IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-123890IPR016177DNA-binding domain
PfamPF008471.1E-54086IPR001471AP2/ERF domain
CDDcd000182.39E-1440101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MARVPRGSWM ARRRELGRLC HGSAHSAASR NYPEGCTWMG VRERVRGRWA AQIRIPGTRT  60
RLWIGRFELA VQAALAYDTA LFCFHGPDRL PSPRRFNFPA APRPIIPEDK RATLTRADIK  120
RIAESHARFL ANFYVGELPA VNPAAASPPP PSAAAADGAA VVADDQATAA TDGSNDNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G205200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444751.11e-126ethylene-responsive transcription factor ERF015
TrEMBLC5YIM31e-125C5YIM3_SORBI; Uncharacterized protein
STRINGSb07g027260.11e-126(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-16ERF family protein