PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G205300.1.p
Common NameSb07g027270, SORBIDRAFT_07g027270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 227aa    MW: 24181.3 Da    PI: 8.6741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G205300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-1154100555
                   AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           G r++  +g W+ eIr+p++   r ++++g+f+++ +Aa a++aa  +++g
  Sobic.007G205300.1.p  54 GLRFRD-SGNWATEIRVPRT---REKVWIGTFDSPRQAALAYDAAVFCFFG 100
                           899**9.7*********965...4*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.5338112IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1351112IPR016177DNA-binding domain
SMARTSM003805.7E-1551118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1852113IPR001471AP2/ERF domain
CDDcd000181.65E-1554114No hitNo description
PfamPF008474.4E-65497IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MCGNKNGELF VAAISSATAV RKVKGKGKRK GKARVRSGHR GVAAGKQKLS AWTGLRFRDS  60
GNWATEIRVP RTREKVWIGT FDSPRQAALA YDAAVFCFFG DRAPKSRKTN FPAAPRPEIS  120
DTDRAKLSIA DVKKISEKHA RKVDALLPPL EAAPDADGLV VAPATPPVAV DAPPAGAGGP  180
AAPPDSADED GELDQLVRDI DIEAFEAELD ALTYLVSDNE YNELYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G205300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444752.11e-162ethylene-responsive transcription factor ERF018
TrEMBLC5YIM41e-161C5YIM4_SORBI; Uncharacterized protein
STRINGSb07g027270.11e-162(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.14e-19ERF family protein