PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G205400.1.p
Common NameSb07g027280, SORBIDRAFT_07g027280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 155aa    MW: 16577.1 Da    PI: 11.7338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G205400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.7e-152877154
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          s y+GVr +  +grW+AeIr+p +   r++ ++g+f t  +Aa a++aa  +++
  Sobic.007G205400.1.p 28 SVYTGVRLRQ-WGRWAAEIRVPGT---RQKLWIGTFETDRQAALAYDAAVFCFY 77
                          78*****998.**********943...59*********99*********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-162882IPR016177DNA-binding domain
PfamPF008475.1E-102876IPR001471AP2/ERF domain
CDDcd000181.09E-172878No hitNo description
PROSITE profilePS5103219.5062990IPR001471AP2/ERF domain
SMARTSM003802.9E-202996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-232990IPR001471AP2/ERF domain
PRINTSPR003675.5E-73041IPR001471AP2/ERF domain
PRINTSPR003675.5E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPTSRAARSG AVRKVPALAP AGRPQKPSVY TGVRLRQWGR WAAEIRVPGT RQKLWIGTFE  60
TDRQAALAYD AAVFCFYGVH LPRGRNFNFP GAPRPDIPAW VRVQLNVTSI KAIAERHARG  120
VDARLPPLVV APATTATAMA AGPSAGEGAS ALPDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G205400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444753.11e-105ethylene-responsive transcription factor ERF015
TrEMBLA0A1Z5RAV91e-106A0A1Z5RAV9_SORBI; Uncharacterized protein (Fragment)
STRINGSb07g027280.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.15e-20ERF family protein