PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G217700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 559aa    MW: 61086.7 Da    PI: 7.8029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G217700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30150207159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgynWrKYG K+vk+se+prsYY+Ct+++Cpvkk vers  +++++ei+Y+g+H h+
  Sobic.007G217700.1.p 150 LDDGYNWRKYGEKQVKKSEHPRSYYKCTHPKCPVKKMVERSL-EGHITEIVYRGSHSHP 207
                           59****************************************.***************7 PP
2WRKY104.94.2e-33360418159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.007G217700.1.p 360 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGRHNHE 418
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.263145209IPR003657WRKY domain
SuperFamilySSF1182909.15E-25147209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-27148209IPR003657WRKY domain
SMARTSM007748.3E-34150208IPR003657WRKY domain
PfamPF031061.4E-23151207IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36345420IPR003657WRKY domain
SuperFamilySSF1182908.76E-29352420IPR003657WRKY domain
PROSITE profilePS5081137.275355420IPR003657WRKY domain
SMARTSM007742.6E-37360419IPR003657WRKY domain
PfamPF031062.0E-25361418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MVPRWSCAMS RLVHHHLCLV LTHPRLECTY LLPLLFLIIT YSFFLLIQSA KAYLAVNNAL  60
ALMNLHCQGS SVVHQTQSLT KDSQGLNVHA NPTATKHETE ENLVKPKTCD SMFDEQSEEI  120
QNGEDSSAPD TGTADDGYFL RVNRRGMPLL DDGYNWRKYG EKQVKKSEHP RSYYKCTHPK  180
CPVKKMVERS LEGHITEIVY RGSHSHPLPL PNSRPSVPLS HFNDSEADGN FSSKPGPGYD  240
SSTSQGIAPK GQFQDVHSGA LETKLSGSLT TTEIADTSVM ESMDVSSTLS SNEKGDRAMN  300
GAVPSTNDMN EDETESKRRK MEVSVASNTA NIVTDMAAMA SRTAREPRIV VQTTSEVDIL  360
DDGYRWRKYG QKVVKGNPNP RSYYKCTYAG CSVRKHVERA SNDLKSVITT YEGRHNHEVP  420
AARNSNGHPS YGSSAAPQGS SLHRRPEPPQ FSMPHAAAAA AYGSLCLPPQ LNAASGGFSF  480
GMLPPAMAMA IPVPSLGNFM PAQMPGHGSP MQGCSGLMLP RGEEKVNPEQ QSRLPVANGN  540
AAATYQQLMG RWPQGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36147421878Probable WRKY transcription factor 4
2lex_A8e-36147421878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121730.0embryo| leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G217700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444812.20.0probable WRKY transcription factor 3
TrEMBLA0A1B6PJ520.0A0A1B6PJ52_SORBI; Uncharacterized protein
STRINGSb07g028430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-83WRKY DNA-binding protein 2