PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G217700.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 535aa    MW: 58239.7 Da    PI: 7.1954
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G217700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30126183159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgynWrKYG K+vk+se+prsYY+Ct+++Cpvkk vers  +++++ei+Y+g+H h+
  Sobic.007G217700.4.p 126 LDDGYNWRKYGEKQVKKSEHPRSYYKCTHPKCPVKKMVERSL-EGHITEIVYRGSHSHP 183
                           59****************************************.***************7 PP
2WRKY1053.9e-33336394159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.007G217700.4.p 336 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGRHNHE 394
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.263121185IPR003657WRKY domain
SuperFamilySSF1182908.63E-25123185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-27124185IPR003657WRKY domain
SMARTSM007748.3E-34126184IPR003657WRKY domain
PfamPF031061.4E-23127183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36321396IPR003657WRKY domain
SuperFamilySSF1182908.24E-29328396IPR003657WRKY domain
PROSITE profilePS5081137.275331396IPR003657WRKY domain
SMARTSM007742.6E-37336395IPR003657WRKY domain
PfamPF031061.9E-25337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MPNNFKSTMP SVPEKSEDHS HEDSAFSFQP ILRSKPSTLW TAEKGSSVVH QTQSLTKDSQ  60
GLNVHANPTA TKHETEENLV KPKTCDSMFD EQSEEIQNGE DSSAPDTGTA DDGYFLRVNR  120
RGMPLLDDGY NWRKYGEKQV KKSEHPRSYY KCTHPKCPVK KMVERSLEGH ITEIVYRGSH  180
SHPLPLPNSR PSVPLSHFND SEADGNFSSK PGPGYDSSTS QGIAPKGQFQ DVHSGALETK  240
LSGSLTTTEI ADTSVMESMD VSSTLSSNEK GDRAMNGAVP STNDMNEDET ESKRRKMEVS  300
VASNTANIVT DMAAMASRTA REPRIVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY  360
KCTYAGCSVR KHVERASNDL KSVITTYEGR HNHEVPAARN SNGHPSYGSS AAPQGSSLHR  420
RPEPPQFSMP HAAAAAAYGS LCLPPQLNAA SGGFSFGMLP PAMAMAIPVP SLGNFMPAQM  480
PGHGSPMQGC SGLMLPRGEE KVNPEQQSRL PVANGNAAAT YQQLMGRWPQ GHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36123397878Probable WRKY transcription factor 4
2lex_A5e-36123397878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121730.0embryo| leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G217700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444812.20.0probable WRKY transcription factor 3
TrEMBLA0A1Z5RBX40.0A0A1Z5RBX4_SORBI; Uncharacterized protein
STRINGSb07g028430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-84WRKY DNA-binding protein 2