PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G217700.7.p
Common NameSb07g028430, SORBIDRAFT_07g028430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 448aa    MW: 48637.2 Da    PI: 7.4341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G217700.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-303996159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          ldDgynWrKYG K+vk+se+prsYY+Ct+++Cpvkk vers  +++++ei+Y+g+H h+
  Sobic.007G217700.7.p 39 LDDGYNWRKYGEKQVKKSEHPRSYYKCTHPKCPVKKMVERSL-EGHITEIVYRGSHSHP 96
                          59****************************************.***************7 PP
2WRKY105.43.1e-33249307159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.007G217700.7.p 249 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGRHNHE 307
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.2633498IPR003657WRKY domain
SuperFamilySSF1182906.67E-253698IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-273798IPR003657WRKY domain
SMARTSM007748.3E-343997IPR003657WRKY domain
PfamPF031061.1E-234096IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-37234309IPR003657WRKY domain
SuperFamilySSF1182906.28E-29241309IPR003657WRKY domain
PROSITE profilePS5081137.275244309IPR003657WRKY domain
SMARTSM007742.6E-37249308IPR003657WRKY domain
PfamPF031061.5E-25250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MFDEQSEEIQ NGEDSSAPDT GTADDGYFLR VNRRGMPLLD DGYNWRKYGE KQVKKSEHPR  60
SYYKCTHPKC PVKKMVERSL EGHITEIVYR GSHSHPLPLP NSRPSVPLSH FNDSEADGNF  120
SSKPGPGYDS STSQGIAPKG QFQDVHSGAL ETKLSGSLTT TEIADTSVME SMDVSSTLSS  180
NEKGDRAMNG AVPSTNDMNE DETESKRRKM EVSVASNTAN IVTDMAAMAS RTAREPRIVV  240
QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTYAGC SVRKHVERAS NDLKSVITTY  300
EGRHNHEVPA ARNSNGHPSY GSSAAPQGSS LHRRPEPPQF SMPHAAAAAA YGSLCLPPQL  360
NAASGGFSFG MLPPAMAMAI PVPSLGNFMP AQMPGHGSPM QGCSGLMLPR GEEKVNPEQQ  420
SRLPVANGNA AATYQQLMGR WPQGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3636310878Probable WRKY transcription factor 4
2lex_A2e-3636310878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121730.0embryo| leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G217700.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444812.20.0probable WRKY transcription factor 3
TrEMBLA0A1Z5RBX40.0A0A1Z5RBX4_SORBI; Uncharacterized protein
STRINGSb07g028430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-84WRKY DNA-binding protein 2