PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G223300.1.p
Common NameSb07g028860, SORBIDRAFT_07g028860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 496aa    MW: 54016.1 Da    PI: 7.9887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G223300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.3e-17208257255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Sobic.007G223300.1.p 208 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 257
                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-23205278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-18206281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-15208261No hitNo description
PfamPF000104.3E-15208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGLQGDKATH DFLSLYTAAK DAALPLLHES KLPPPPTTTT SHQGLFLKTH DLLQPLERPP  60
PPQAPAEKPL HQHLLPGGIG TFSISPGPRG RGAAAVVKQE QQTPFALWGQ PDPRGHPWSL  120
PFAARCVAVA SARPQQPQPQ QQRPPERKAC GGFMDAGSRS SGGAGFDDDD GLAARREVSS  180
SLKDHRVEAK GGSCSGSAGT DQLPNTPRSK HSATEQRRRS KINDRFQILR EILPQNDQKR  240
DKASFLLEVI EYIRFLQEKV EKHEASQPEW NQENAKIMPW SNIYFRSSWK NSQNKDEVNG  300
DTTTDASLVI KNGSSPRFPF AAKPGDLNNA AAFETASGAH ERVELEPKGC VPRKEDETPN  360
NVTNNVATQQ AAETQLTNPS PSDDLAGNNG MLNNPELAID EGTISLSSQY SEGLLTTLNL  420
ALQNSGVDLS QASISVQINL GKRAIKRCND PGPNPTSKDL MNHMSHDQEI GQQLIRSGDG  480
ARERSRATKR HRSER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G223300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445973.10.0transcription factor BIM1
TrEMBLC5YJN20.0C5YJN2_SORBI; Uncharacterized protein
STRINGSb07g028860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-53BES1-interacting Myc-like protein 2