PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G224400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 232aa    MW: 25063.8 Da    PI: 7.726
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G224400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.13e-11119172457
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                            +r rr+ +NRe+ArrsR RK+ ++ eL   v  L + N++L + l++    +a
  Sobic.007G224400.1.p 119 ERRRRRMVSNRESARRSRMRKQRQLSELWAQVSHLRGANRRLLDDLNRALRSCA 172
                           5899***************************************99998777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-8115171No hitNo description
SMARTSM003387.2E-10116180IPR004827Basic-leucine zipper domain
PfamPF001708.7E-9118170IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.243118181IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.42E-10120168No hitNo description
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
CDDcd147022.22E-13125172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYHHLHGEVA SLRFLSPPSA SHQHHHMNMA LPPPAYFPAL SLELESALQD DATLLTIIDG  60
GGDTACFELD TIVREAAAHL AGNNNGSPSL SGSGSDGAGR DYHQLGAVTM TTTAAADEER  120
RRRRMVSNRE SARRSRMRKQ RQLSELWAQV SHLRGANRRL LDDLNRALRS CADARRESAR  180
LRDEKAELAN KLDQLLLLQA AAEKGAPAAA STSSCSSEAE PRSNNTSSTS T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132139RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G224400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766321e-107EU976632.1 Zea mays clone 985663 bZIP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321108.11e-167basic leucine zipper 63
TrEMBLA0A1B6PJ711e-165A0A1B6PJ71_SORBI; Uncharacterized protein
STRINGSb07g028900.11e-151(Sorghum bicolor)
STRINGSb07g028960.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP1302545