PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G226600.3.p
Common NameSb07g029150, SORBIDRAFT_07g029150
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 185aa    MW: 20230.5 Da    PI: 5.0249
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G226600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-1952106356
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++++eq+++Le+ Fe  n+++  e++++LA++lgL+ rqV vWFqNrRa++k
  Sobic.007G226600.3.p  52 KKRRLSTEQVRALERSFETeNNKLEPERKARLARELGLQPRQVAVWFQNRRARWK 106
                           45689*************88**********************************9 PP
2HD-ZIP_I/II1345.3e-4351144193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                           ekkrrls+eqv++LE+sFe+e+ kLeperK++lareLglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L 
  Sobic.007G226600.3.p  51 EKKRRLSTEQVRALERSFETENnKLEPERKARLARELGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDELRRDKDALL 139
                           69*****************9988****************************************************************** PP

           HD-ZIP_I/II  89 eelke 93 
                           +e+ke
  Sobic.007G226600.3.p 140 DEIKE 144
                           99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-1933110IPR009057Homeodomain-like
SMARTSM003891.8E-1750112IPR001356Homeobox domain
PROSITE profilePS5007117.44351108IPR001356Homeobox domain
CDDcd000864.10E-1852109No hitNo description
PfamPF000461.2E-1652106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1958107IPR009057Homeodomain-like
PRINTSPR000312.8E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000312.8E-688104IPR000047Helix-turn-helix motif
PfamPF021831.8E-16108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKRPSGSISG GGGGGSPDLL PVVHSDDGFG GVGMEDADED MVPCNGIGFG EKKRRLSTEQ  60
VRALERSFET ENNKLEPERK ARLARELGLQ PRQVAVWFQN RRARWKTKQL ERDYAALRHS  120
YDALRADHDE LRRDKDALLD EIKELKAKLG DDDAFSSVKE EPAASDVEVP AAGAAQGSVT  180
ILDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783ERKARLA
2100108RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.74251e-97callus| embryo| ovary| root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf and floral organ primordia, floral meristems, embryonic axis and cells surrounding the vascular bundles. Expressed in the vasculature of roots, stem, leaves and spikelets, and in the vascular bundle of the scutellum in embryos. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniprotTISSUE SPECIFICITY: Expressed in leaf and floral organ primordia, floral meristems, embryonic axis and cells surrounding the vascular bundles. Expressed in the vasculature of roots, stem, leaves and spikelets, and in the vascular bundle of the scutellum in embryos. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G226600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932931e-101FP093293.1 Phyllostachys edulis cDNA clone: bphyst018a11, full insert sequence.
GenBankFP0970391e-101FP097039.1 Phyllostachys edulis cDNA clone: bphyem105n11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445988.21e-125homeobox-leucine zipper protein HOX4 isoform X3
SwissprotQ6K4987e-75HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH377e-75HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A1Z5RCC11e-130A0A1Z5RCC1_SORBI; Uncharacterized protein
STRINGSb07g029150.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-46homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]