PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G001700.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 355aa MW: 38038 Da PI: 9.1767

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G001700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	58	116	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprC+s+ntkfCyynny++ qPryfCk+CrryWt+GG+lrnvPvGgg+rknk++s Sobic.008G001700.1.p 58 EALRCPRCNSNNTKFCYYNNYNTMQPRYFCKGCRRYWTHGGTLRNVPVGGGCRKNKRAS 116 7899****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-27	54	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	59	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDMSSSTTAA ASAPHNHQQE AMVSSPNIKE EARSPKQAEA TQQPSGSGER KPRPQLAEAL 60 RCPRCNSNNT KFCYYNNYNT MQPRYFCKGC RRYWTHGGTL RNVPVGGGCR KNKRASRSVS 120 GSGSSSSSAA YAPLSPDTNT SSSKMSINTQ PMMVPNMMMP TPTMTGLFPN VLPTLMSTGG 180 GSHFNFTMDN QHASMPFTPM PLSNQASVPM LAAGGSGTMP SFLEMLRRGL LHGSSSYDAG 240 LVMSGGNNEM DMSFPLPAYG AMHGHGLSGS TTDDARQLVG TQQGMNTDSG FAGSTRVQEE 300 EEEKGDNKAM VKSSNNNNGG SLLDRYWTKP NNNNNNNNNN NNNNNNNNNK GQQG*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDMSSSTTAA ASAPHNHQQE AMVSSPNIKE EARSPKQAEA TQQPSGSGER KPRPQLAEAL  60
RCPRCNSNNT KFCYYNNYNT MQPRYFCKGC RRYWTHGGTL RNVPVGGGCR KNKRASRSVS  120
GSGSSSSSAA YAPLSPDTNT SSSKMSINTQ PMMVPNMMMP TPTMTGLFPN VLPTLMSTGG  180
GSHFNFTMDN QHASMPFTPM PLSNQASVPM LAAGGSGTMP SFLEMLRRGL LHGSSSYDAG  240
LVMSGGNNEM DMSFPLPAYG AMHGHGLSGS TTDDARQLVG TQQGMNTDSG FAGSTRVQEE  300
EEEKGDNKAM VKSSNNNNGG SLLDRYWTKP NNNNNNNNNN NNNNNNNNNK GQQG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Seed endosperm. {ECO:0000269\|PubMed:9207153}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G001700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ540087	0.0	HQ540087.1 Sorghum bicolor clone SbDof24 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302218.1	0.0	dof zinc finger protein PBF
Swissprot	O24463	1e-151	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	C5YPQ7	0.0	C5YPQ7_SORBI; Uncharacterized protein
STRING	Sb05g000310.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G001700.1.p

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]