PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G005000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 209aa    MW: 22310.3 Da    PI: 7.2604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G005000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.3e-40221161100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++     r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++q
  Sobic.008G005000.1.p  22 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQQ-----RADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQ 105
                           7*********************************************98.....************************************ PP

                DUF260  90 lkaelallkee 100
                           l+++lal+k+e
  Sobic.008G005000.1.p 106 LQVQLALAKAE 116
                           *******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.92221117IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3922114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAGSGSGSGS GSSSSSSSSS PPCASCKLLR RRCTQECVFA PYFPPEDPHK FAIVHKVFGA  60
SNVSKMLQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ QQVSQLQVQL ALAKAEILCV  120
QMQHDESASA AAAPAPAKQQ LHHHHHQQEE MECEAYGSLL VQNGLMMNTL NSTGAVHHQQ  180
QMLGSFGSAG NTAMMLQEAC LKKETLWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-43121181112LOB family transfactor Ramosa2.1
5ly0_B1e-43121181112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G005000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008522e-77FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441669.21e-108LOB domain-containing protein 12
SwissprotQ8LBW34e-62LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1B6PAP61e-151A0A1B6PAP6_SORBI; Uncharacterized protein
STRINGGRMZM2G025989_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.17e-52LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]