PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G016300.1.p
Common NameSb08g001435, SORBIDRAFT_08g001435
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 713aa    MW: 80471 Da    PI: 5.711
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G016300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1798.9e-2577166289
                  FAR1   2 fYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                           fYneYA+++GF  r+ +s++sk ++e +++++fvCs+eg  ++++++  + +++r+r++ r gC+a+++v +e  ++w+v+kle+ HnH
  Sobic.008G016300.1.p  77 FYNEYARRLGFPFRVGRSRRSKGTEEvVVMKRFVCSREGMYKKKQTSpeDATRKRERMSMREGCNAMMEVVRE-VDHWVVSKLEKAHNH 164
                           9********************766551789*********99999998777788899**************999.99************* PP

                  FAR1  88 el 89 
                           +l
  Sobic.008G016300.1.p 165 DL 166
                           98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-2277166IPR004330FAR1 DNA binding domain
PfamPF105511.0E-27263354IPR018289MULE transposase domain
PROSITE profilePS5096611.301542578IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-8548575IPR007527Zinc finger, SWIM-type
SMARTSM005750.0021553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEGERTEGDE LIADYVDCLM SLDTNARPVH SDGLILGAAV GAGTEADAMR DFPSAEGDPN  60
EPMLGMTFES DEAAKAFYNE YARRLGFPFR VGRSRRSKGT EEVVVMKRFV CSREGMYKKK  120
QTSPEDATRK RERMSMREGC NAMMEVVREV DHWVVSKLEK AHNHDLGTCS AKVGYLRARG  180
LLGGGSDKAT ATIVGPDEMA FLRQNVLGEG GDAQGLLDYL KKMQANDPAF CHAIQVDKNG  240
CVVNVFWADA RAKAAYRHFG DAVTFDTTYK KNKYMMPFVT FSGVNHHLQP VIFGCALLME  300
ETEFSFIWLF ETWLAAMGGK APCSLVTDQN RAMKAAIGKV FSNSCHRFCK WNILSRTKQK  360
LTHPYSEHPT LRDELESCVL ETETISTFET TWMSIIDRYD LRKNSWLQAI YNIRQKWVPL  420
YLMDTFFAET SPTWKLETMN DFYKKYFNTK TTLEVFLNQF DLSLASRYED EAKADMDAYL  480
NKATTKTASL IEKQAASTYT KAVFSKFQEE FTESLGFIIQ KTKDGCISEY SITKDEDPSD  540
TFYVTYNASN KMANCSCKHF EFSGILCRHI LGVYIIVDPR TLPTQYFMKR WTMKARDDDA  600
LLEDNNNSTH DEDASQSTTS RYNALCADAI RCAEKGAGSE AVYKAAKDIL QKAYEEIIAY  660
ERNPGRGSQR DAININEVVT VDDAINDQSM PDSGRKVTNL LGQFLDSTWS PV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G016300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693780.0AC169378.2 Sorghum bicolor clone SB_BBc0007L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441730.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301924.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLC5YQM00.0C5YQM0_SORBI; Uncharacterized protein
STRINGSb08g001435.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-152FAR1-related sequence 5