PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G017600.2.p
Common NameSb08g001520, SORBIDRAFT_08g001520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 555aa    MW: 59415.2 Da    PI: 8.8484
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G017600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.71.2e-15171393127
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWk 84 
                           +GfrF+Pt +e vv+yL + ++g++    + +vi+++ d+y+++P dL ++++   ++ + +fF+  +k      r+  a+   s+ W 
  Sobic.008G017600.2.p  17 RGFRFRPTPQEAVVYYLPRLISGEPlhEVVRSVIHHAdDVYDCKPADLARRFRPmpRTGDRFFFTVVNKG----VRAAAAAGpgSSSWA 101
                           7************************53223457999989*********8654442244478999998774....4555554433778*9 PP

                   NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           a+ + + +++ +g ++g  + L +     ++g+  dW+m+ey+
  Sobic.008G017600.2.p 102 AQTT-TGIKDDEGVQIGELRKLRYK----KDGVLMDWLMDEYS 139
                           9866.778888************97....78999********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-1910161IPR003441NAC domain
PROSITE profilePS5100521.16315161IPR003441NAC domain
PfamPF023651.2E-917139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MMTTPAPPAL GQEIFSRGFR FRPTPQEAVV YYLPRLISGE PLHEVVRSVI HHADDVYDCK  60
PADLARRFRP MPRTGDRFFF TVVNKGVRAA AAAGPGSSSW AAQTTTGIKD DEGVQIGELR  120
KLRYKKDGVL MDWLMDEYSS CGAGGDDKQQ QQFVFCKVYV SPRAAPTSLA HQESAAFFAL  180
PPLPPAAVIA QPAVKRTVPP AMQAAMPPCA KRTAPPPLQD AMPPCAKRMR GPVLQPAPQP  240
PAPPARIRSP FTAVQKFYSA PPQPCAPLRG SPAPKPPTPP APIRSPLTAV QQKLYSAPPQ  300
RCAPLRGSPA PQPPVPPAPI RSPLTAVQQK LYFAPPQPCA PLRGSPAPKP QAPPAPIRSP  360
LTAAQKLYFG PPQPQPCAPL RGSPAPPSVT QTQPSPAPIQ TPAPPPVPTR PVVEPRRSPM  420
PAPPRPPKQQ VPLPTPPAVR ACHMPRQALA PAPCRPQQVS VQSKQRKILD PFEAAIQAEE  480
QTVAAAPHPP PSKQFVAAAP ALQDDDDDDD DDLVKDLENA MSAAESEEQT VAAALQGEDE  540
DDWDDLAKAL ELEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119126RKLRYKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G017600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693780.0AC169378.2 Sorghum bicolor clone SB_BBc0007L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-69atherin-like
TrEMBLA0A1B6PB480.0A0A1B6PB48_SORBI; Uncharacterized protein
STRINGSb08g001520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Representative plantOGRP9262314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-10NAC domain containing protein 53