PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G029000.2.p
Common NameSb08g002560, SORBIDRAFT_08g002560
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 216aa    MW: 24676.3 Da    PI: 6.6009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G029000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY599.4e-1971135359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                           Dg +WrKYGqK++++s++pr+YYrC+++   gC+++k v+++++      p +++++Y+++H+++
  Sobic.008G029000.2.p  71 DGRQWRKYGQKHINKSKHPRNYYRCAYRqeqGCKATKTVQQQDDstgtdHPVMFTVVYHDQHTCK 135
                           999************************98889********9975222214679**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-2263135IPR003657WRKY domain
SuperFamilySSF1182905.62E-2065135IPR003657WRKY domain
SMARTSM007743.2E-2769136IPR003657WRKY domain
PfamPF031062.8E-2271135IPR003657WRKY domain
PROSITE profilePS5081115.1771111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAELQRHHQS DDGARARPDD VLVDDKKRVK RSISDDCISK EEDVVKPRHK QLKRGRFDES  60
MSLETPVPHY DGRQWRKYGQ KHINKSKHPR NYYRCAYRQE QGCKATKTVQ QQDDSTGTDH  120
PVMFTVVYHD QHTCKDNNGI NLGIDDSETN SQSSISTIST DPYGRETPSL DGNKLLDKSA  180
DLITRNSMYE PADMTVFEPL DLDSWALDAF LRFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-13711351069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G029000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441803.21e-162probable WRKY transcription factor 62
TrEMBLA0A1Z5R5F61e-161A0A1Z5R5F6_SORBI; Uncharacterized protein
STRINGSb08g002560.11e-161(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Representative plantOGRP1147447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-17WRKY DNA-binding protein 70