PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G029200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 268aa    MW: 30335.9 Da    PI: 6.4328
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.27.8e-19121185359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 
                           Dgy+WrKYGqK + +++++rsYYrC+ +   gC ++k v+++++d++     ++++ Y g+H ++
  Sobic.008G029200.1.p 121 DGYQWRKYGQKWISKAKHSRSYYRCANSkdqGCLATKTVQQKESDGStgtvrLFNVEYYGQHICK 185
                           9************************9988889***********99863322268899*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-21105186IPR003657WRKY domain
SuperFamilySSF1182907.59E-19114185IPR003657WRKY domain
SMARTSM007749.4E-28119186IPR003657WRKY domain
PROSITE profilePS5081115.789121165IPR003657WRKY domain
PfamPF031061.6E-20121185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNILESSTHS GCQVVINEIE HQRALMTDLH DLILPTLDPC SRQDAQQLFQ DIFSSSSKVI  60
SFLQLGDNSK KPANLIKYRR KGGKNNVESH MLGDEAKEIG NKRRKNAQHT GSVMTQAPHF  120
DGYQWRKYGQ KWISKAKHSR SYYRCANSKD QGCLATKTVQ QKESDGSTGT VRLFNVEYYG  180
QHICKKDDII HPYVVETTDY SAPIANYNQS SSSSMFVHND VLGIHDESFE NFFMVPGMPE  240
YLTDFTDFET AEALEVTSMI ISEDIWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283250.0KJ728325.1 Zea mays clone pUT6606 WRKY transcription factor (WRKY91) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441804.20.0probable WRKY transcription factor 67
TrEMBLC5YRA30.0C5YRA3_SORBI; Uncharacterized protein
STRINGSb08g002570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Representative plantOGRP1240236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.11e-18WRKY DNA-binding protein 67