PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G036900.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

G2-like

Protein Properties

Length: 357aa MW: 39718.4 Da PI: 6.0621

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G036900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.4	3.2e-28	273	323	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQ Sobic.008G036900.2.p 273 KPRRCWAPELHRRFLQALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQ 323 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.313	269	330	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-13	271	325	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-24	272	327	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-24	273	324	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEMDPPPPPP LHADNRRRRR CREYLLALEE EERKIRVFQR ELPLCLDLVT QTIEEMRSHM 60 DSVVVGSEEE TVSDHGGGPV LEEFMPLKPT LSSSSSEDDD DDEHDSSRHH QHRAAGVGDD 120 DKKNDEASGD PETAAALASS RRPLLPQPET KKAMPDWLQS VQLWSNQQQP PPQQQHQDEL 180 LLPCRPVALN AYRKPGGAFQ PFEKDKDKEK QRGELPLPAS SSAAASSAVV GDSCCDRAGG 240 ATDTDTAENT NKLSIKGGKD KEAQSSSQAP GRKPRRCWAP ELHRRFLQAL QQLGGSHAAT 300 PKQIRELMKV DGLTNDEVKS HLQVRIRIQE LPQKKDFICS SCLMVASVWS HFVLHF*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEMDPPPPPP LHADNRRRRR CREYLLALEE EERKIRVFQR ELPLCLDLVT QTIEEMRSHM  60
DSVVVGSEEE TVSDHGGGPV LEEFMPLKPT LSSSSSEDDD DDEHDSSRHH QHRAAGVGDD  120
DKKNDEASGD PETAAALASS RRPLLPQPET KKAMPDWLQS VQLWSNQQQP PPQQQHQDEL  180
LLPCRPVALN AYRKPGGAFQ PFEKDKDKEK QRGELPLPAS SSAAASSAVV GDSCCDRAGG  240
ATDTDTAENT NKLSIKGGKD KEAQSSSQAP GRKPRRCWAP ELHRRFLQAL QQLGGSHAAT  300
PKQIRELMKV DGLTNDEVKS HLQVRIRIQE LPQKKDFICS SCLMVASVWS HFVLHF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.1926	0.0	callus\| ovary\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G036900.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035536	1e-149	BT035536.2 Zea mays full-length cDNA clone ZM_BFb0068J14 mRNA, complete cds.
GenBank	KJ726838	1e-149	KJ726838.1 Zea mays clone pUT3378 G2-like transcription factor (GLK5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441840.1	0.0	transcription factor NIGT1
Swissprot	Q6Z869	1e-83	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A1Z5R4Q8	0.0	A0A1Z5R4Q8_SORBI; Uncharacterized protein
STRING	Sb08g003180.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G036900.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]