PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G040600.1.p
Common NameSb08g003500, SORBIDRAFT_08g003500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 185aa    MW: 20042.6 Da    PI: 9.7878
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G040600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.3e-11107169163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+++kke +   ke+ +lk  +
  Sobic.008G040600.1.p 107 EKEEKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNETMKKEKDVVMKEYLSLKETN 169
                           7999*******************************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-5105171No hitNo description
PfamPF001701.3E-9107169IPR004827Basic-leucine zipper domain
SMARTSM003382.9E-13107171IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.243109172IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-7111167No hitNo description
CDDcd147024.56E-11112162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTDPMSDGGD GQQRRRQCRR GIVTPDVELG AALALADMAA GSSAVQMTDD EEMASTRLSL  60
QLGRVGVHQS PSCSSSSSAG RPSAAPGGSG AAAHHGPRPR HMLTEAEKEE KRLRRVLANR  120
ESARQTILRR QAIRDELARK VADLSSQNET MKKEKDVVMK EYLSLKETNE QLKAQAHHLS  180
LSLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G040600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879054e-75AK287905.1 Oryza sativa Japonica Group cDNA, clone: J065211O07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441853.11e-131G-box-binding factor 3
TrEMBLC5YS471e-130C5YS47_SORBI; Uncharacterized protein
STRINGSb08g003500.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Representative plantOGRP45691318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.14e-17bZIP family protein