PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G044100.1.p
Common NameSb08g003780, SORBIDRAFT_08g003780
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 818aa    MW: 93892.9 Da    PI: 5.1405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G044100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.4e-2497183290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                            Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v++++ eHnHel+
  Sobic.008G044100.1.p  97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIVPEHNHELV 183
                           7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2297183IPR004330FAR1 DNA binding domain
PfamPF105512.3E-27295389IPR018289MULE transposase domain
PROSITE profilePS509669.285576612IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-4578605IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-4587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MEGTTIAIEI DGEAICLGSV EDNEQEAEEN GEMQQIIYST ENGEQVAFDN QEQRREEDPA  60
GNEEEDREHS SIIPSREELT EELRNKVAYS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPE TRTNCKAMVR FRVDSEGQWR VIQIVPEHNH  180
ELVRPEEIHL LRSVRTLSVP KSGVLNAMVN AEIQAMHDSL HINEDGTECH SQLSIRSYTL  240
LEPEECEALV GYFKRRSNEQ GMFYWDVEVD QEGRMTNFFW RDGKSRVDYD SFGDVVIFDT  300
SYRTNKYNMI CATFIGVNHH RQNVMLGCAF LLDESLTSYE WLFKSFLESV GGRPPKTIFT  360
DQNEFISKAT ENVLPGTRHC LCQRLIEKNM LSHLGTINDS GTCHSLLIKC MRGCESEAEF  420
DATWAMMHHE YNMQEHTWLT DLYQQRHKWC TALHKDAFDG GIESMDRNEG LNNVLGNIDD  480
ESTSLASFVL ELDKIAGSWR KTESLEDIQC NQAAPQCTVK HNRILQHAAE VYTHKVYKYL  540
ETDFLDGTGA TSYQEVQCNE TLYKFEFVLQ SSPNVWVVFL NTSTMELSCT CKKFETMGVL  600
CLHALNALGL KNVDRIPERY ILNRWTKYAR KGTYPFPVDE FAEQDRTEAA SVYHNRAMWF  660
VYDLLTKSKS HHNTRKLILD VLENGEKSLE NMCDLKRLHM NPVGKEKDGS RVEKRKKKST  720
KQEKQSRNVK QVVLPQPADP VFVDPPNQDQ YFAAEDIASN SSVGRPYFYQ GYPATVVSTS  780
QIQGHTNMHS EPQCASQEYS AYGAVQPPSQ FGGGSNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.50800.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G044100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690660.0BT069066.1 Zea mays full-length cDNA clone ZM_BFb0161A09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441864.10.0protein FAR1-RELATED SEQUENCE 12
RefseqXP_021301536.10.0protein FAR1-RELATED SEQUENCE 12
TrEMBLC5YS770.0C5YS77_SORBI; Uncharacterized protein
STRINGSb08g003780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1476744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.19e-79FAR1 family protein