PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G057700.1.p
Common NameSb08g004860, SORBIDRAFT_08g004860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 604aa    MW: 65004.1 Da    PI: 6.3795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G057700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.32.7e-1881501127
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyat.gkrknr.atksgy 82 
                           lppG+ F+Pt ee v +y+k+ ++g +l++++vi +vd+y+  P  L         ++ e++w   s+   + +t   r +r +++ g 
  Sobic.008G057700.1.p   8 LPPGVYFNPTAEECVRDYIKPWAAGVPLQTDRVICDVDVYSDSPGALLLgrepgFSRGFEHKWLLLSRCGGRGKTaAGRGKRvVATGGS 96 
                           79****************************99***************63345543344566998888776555543678888677899* PP

                   NAM  83 Wkatgkdkevlsk.......kgel..vglkktLvfy..kgrapkgektdWvmheyr 127
                           W++  + k v+ +       +  +   g ++++ fy  k+ +++gekt W+m+e++
  Sobic.008G057700.1.p  97 WQSEQTPKGVVGTedgegdgE--QphGGRRRSFGFYvgKNGRKRGEKTPWLMEEFT 150
                           **********99877666543..15599********665567899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-204173IPR003441NAC domain
PROSITE profilePS5100526.6368173IPR003441NAC domain
PfamPF023659.3E-109150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAAPLRALPP GVYFNPTAEE CVRDYIKPWA AGVPLQTDRV ICDVDVYSDS PGALLLGREP  60
GFSRGFEHKW LLLSRCGGRG KTAAGRGKRV VATGGSWQSE QTPKGVVGTE DGEGDGEQPH  120
GGRRRSFGFY VGKNGRKRGE KTPWLMEEFT ALEEDGHGGG DGTFVVFCRI YLSPRLDKED  180
KEKKRQILGD DMVAFDRNGK LKPVRVVASP GLFDAVAQVQ GTAPPPPRVL GFQQAQPARR  240
VLEHQQGQPP TPSPPPRVLG FQQAQPAWRV LGHQQGLPPM PSPSPPPRVL GFQQAQPARR  300
VLGRQQGQPP TPSPSPPPCV LGFQQAQPAR RVLGHQQGQP PTPSPSPAPR FLGYQHGQQP  360
AAPPLLRFLG HQHGQAAATP AVLGDQHGRA MLPWGVPAHH HGHAAAAAAP HQRFLGYRQC  420
QAAVQGGPDE YCGTAVQPQL LHVLDPCYNQ EASPSVRLVD PQQGEVMNHA EKKPRLSYEQ  480
GVMIQIHDDN QCCAEPVATT PPPQEIPGTA TAGSAEAEPP CDVSAPAPAE LADDAGKAGA  540
EPMLDPGIYT NLVEFEPFTD AVSNFLVHGE FNPPYDDDDP PPEPGFDEFQ LVEFGVVFDD  600
LMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G057700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5R4X50.0A0A1Z5R4X5_SORBI; Uncharacterized protein
STRINGSb08g004860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Representative plantOGRP1453134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.19e-10NAC domain containing protein 63