PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G064250.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 176aa MW: 18498.3 Da PI: 11.0408

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G064250.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.3e-08	24	68	3	51
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +a +e Er RR+++ ++eL lP + ++ s a iLe A+ Y+ Sobic.008G064250.1.p 24 EASPEPERARRRHMSRLYAELGAQLPGL----PPRASRARILEDAIAYV 68 677899*******************6....389***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.21E-7	20	76	No hit	No description
PROSITE profile	PS50888	12.201	21	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-10	21	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	24	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-4	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-7	30	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	5.83E-5	110	171	No hit	No description
CDD	cd04873	0.00503	119	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAQAQDQEHP LALSLPPPAK AKEEASPEPE RARRRHMSRL YAELGAQLPG LPPRASRARI 60 LEDAIAYVGV LRATVAGLEA RAAFAKAAAT ATATPASAAE VVVAGKASCF AVRLPVARRR 120 GALTRVLEVF RRHGVPVLEA TVTSDGGEAA VTVTTAPVPP RFLQRIQEDI RSSIA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G064250.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021301576.1	1e-118	transcription factor bHLH95-like isoform X2
TrEMBL	A0A1Z5R663	1e-116	A0A1Z5R663_SORBI; Uncharacterized protein
STRING	Pavir.Eb01569.1.p	6e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31
Representative plant	OGRP12068	2	3

Link Out ? help Back to Top
Phytozome	Sobic.008G064250.1.p