PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G067900.1.p
Common NameSb08g005635, SORBIDRAFT_08g005635
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 362aa    MW: 40060.3 Da    PI: 9.6517
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G067900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.16.8e-072282521741
                           HHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeae 41 
                           A+rsR RK+++i+eLe++v++L++e
  Sobic.008G067900.1.p 228 AQRSRVRKLQYIAELERRVQSLQTE 252
                           89********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-5217276IPR004827Basic-leucine zipper domain
CDDcd147031.64E-14218268No hitNo description
SuperFamilySSF579597.5E-6227270No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-7228270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMANGRLQKQ ALLPPRSPFP VAAAAGAAPH AELGPIARPR DAHHRHGHQR TSSESFLADE  60
QPSWLDDLLD EPESPAARAH GRPGHRRSSS DSFALFEGGS SAAAGGMYDN VLDGMRGGGG  120
GQVASWAGAP EFFPEPTSFG RPQGRPWESR PMYRQGGGMP MPGREKNAGR HGPSSSFADH  180
EHGHVPNGVD RKGHGDVAHD QRIVAERKEG LRHSQSEADT KRAKQQYAQR SRVRKLQYIA  240
ELERRVQSLQ TEGIEVTAEM DFLGQQNIML DLENKALKQR LESLSQEHLI KRYQQEMFER  300
EIGRLRTLFQ QQQQQQQHVP QQQAPSHSRS NSRDLDSQFA NLSLKHSDPS SGRDAVSGLR  360
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G067900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554850.0EU955485.1 Zea mays clone 1534270 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441963.20.0uncharacterized protein At4g06598
TrEMBLA0A1B6PC570.0A0A1B6PC57_SORBI; Uncharacterized protein
STRINGSb08g005635.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33103666
Representative plantOGRP42521219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-57bZIP family protein