PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G069200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20011.4 Da    PI: 9.6999
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G069200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.5e-1276122347
                           --SHHHHHHHHHHHHHHHHHHHH.HH.HHHHT-EEEEEEE-TTSEEE CS
                SRF-TF   3 ienksnrqvtfskRrngilKKAe.EL.SvLCdaevaviifsstgkly 47 
                           +en++   +tf+ Rrng+lKKA+ EL  vLC a va+i++ s+ +++
  Sobic.008G069200.1.p  76 VENNTSWPITFCMRRNGLLKKAYdELfAVLCYAVVALIVVFSSRRVR 122
                           68999999**************856659********99976655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-1065124IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.64765128IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-1065127IPR002100Transcription factor, MADS-box
PfamPF003193.6E-976121IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSSALSSSIC YAVVALIVVF SSRGRLYERV RQQQVMSSPV EWTSFQTVGI SFLLWWLLSA  60
EIFNMGRGRI ENKRVVENNT SWPITFCMRR NGLLKKAYDE LFAVLCYAVV ALIVVFSSRR  120
VRLYERVRQQ VMSSPMNWMS FRTLLVGYFL VWSILPVESV ISDWEFYCGK ET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G069200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442984.21e-118uncharacterized protein LOC8082802
TrEMBLA0A1Z5R5421e-120A0A1Z5R542_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.28e-17MIKC_MADS family protein