PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G072800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24873.6 Da    PI: 9.6176
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G072800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.4e-251058250
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          +ien   r vtfskRr+g+lKKA ELSvLC+a+v viifsstgk++e +
  Sobic.008G072800.1.p 10 QIENPVHRRVTFSKRREGLLKKARELSVLCGADVGVIIFSSTGKVHELA 58
                          69********************************************965 PP
2K-box33.81.4e-12821691097
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           ++ +++  ++ ++ Lk+ei  Lq+ + +  G + e++ l  L+ Le+ Le    + Rs K++++ ++i+ l++ke+ l++en+ L++k
  Sobic.008G072800.1.p  82 KNLQSQVKEHLVSLLKEEICLLQHGLSRSTGGGAEDMRLDRLHALEKGLELWYYQTRSAKMQIMQQEIHFLRNKENILKSENEILQQK 169
                           23333444455789************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.217161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-28179IPR002100Transcription factor, MADS-box
CDDcd002651.12E-34378No hitNo description
PRINTSPR004043.8E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231156IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-243859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-1385169IPR002487Transcription factor, K-box
PROSITE profilePS512979.82586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVRGKVQMRQ IENPVHRRVT FSKRREGLLK KARELSVLCG ADVGVIIFSS TGKVHELATN  60
GNMQSLVERY QSITARDQME SKNLQSQVKE HLVSLLKEEI CLLQHGLSRS TGGGAEDMRL  120
DRLHALEKGL ELWYYQTRSA KMQIMQQEIH FLRNKENILK SENEILQQKE GILKAENKVL  180
QQKVNEQNEF INNCLAFSGS SYPMHYNINE SSLFKI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedling roots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G072800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807982.11e-124MADS-box transcription factor 33-like isoform X1
SwissprotQ2QW551e-80MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A1Z5R6411e-157A0A1Z5R641_SORBI; Uncharacterized protein
STRINGPavir.Ca00337.1.p9e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-51AGAMOUS-like 12